Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2255 127 2e-24 seq486 125 6e-24 seq176 105 6e-18 seq1231 96.9 3e-15 seq736 89.7 4e-13 >seq2255 Length=141741 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| |||||| | ||||| || ||||||| | || || ||| || Sbjct 140472 AATGCAAATATTTGTTAAGACTCTCACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTC 140413 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| || ||| |||||||| || || ||||| ||||| Sbjct 140412 CGACACGATTGATAATGTCAAGGCTAAGATCCAAGACAAAGAGGGCATCCCACCAGACCA 140353 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || |||| ||||| ||| |||||||| Sbjct 140352 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 140293 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| ||||| || || || |||||||| Sbjct 140292 TATTCAAAAGGAATCAACCCTTCACTTAGTGCT 140260 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | ||||| || | ||||| | ||||| || || Sbjct 95359 ATGCAAATATTTGTCAAGACCCTTACCGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 95418 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 95419 GATACTATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACC 95476 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | || |||| |||||| | | ||| |||| Sbjct 95477 AGCAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACCCTTGCCGACTACA 95536 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || || || ||||| Sbjct 95537 ACATCCAGAAGGAGTCCACCCTGCACTTGGTGCT 95570 >seq486 Length=243247 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||||||||| || || | ||||| | || |||||| || Sbjct 19788 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCA 19729 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||| |||||||| ||||||||||| Sbjct 19728 GATACCATAGACAATGTGAAGGCAAAGATTCAA-GACAAGGAAGGGATCCCACCTGACCA 19670 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||| || || || | || |||| | ||| ||| ||||| || Sbjct 19669 ACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 19610 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || | ||| | || || | ||||| || || Sbjct 19609 TATCCAGAAGGAATCTACTTTGCATCTTGTTCTTCGACTAAGGGGTGG 19562 Score = 98.7 bits (108), Expect = 9e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||| ||| Sbjct 19329 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTCT 19270 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||| |||||||| ||||||||||| Sbjct 19269 GATACCATAGACAATGTGAAGGCAAAGATTCAA-GACAAGGAAGGGATCCCACCTGACCA 19211 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||| || |||||||||| || || || | || |||| Sbjct 19210 ACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATG 19173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATC---CATCACAGTCGAAGTGGAGTCG 25055 |||||| ||||||| ||||||||||| || || | |||||| | || |||||| Sbjct 19560 ATGCAAGTATTTGTCAAGACTTTGACTGGAAAGACTATCATCACTCTGGAGGTGGAGGGT 19501 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || || || || || | || || | ||| || |||||||| || || ||| Sbjct 19500 TCGGATACCAT--AGACAATGTCAAGGCGAAGATTCA-AGATAAAGAAGGAATCCCTCCT 19444 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||| || | |||||||| || || || |||| |||| | | || | | ||| Sbjct 19443 GACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGAT 19384 Query 25173 TACAATATTCAAAAAGAATCCAC 25195 || || || || || |||||||| Sbjct 19383 TATAACATCCAGAAGGAATCCAC 19361 >seq176 Length=136227 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| ||| Sbjct 88617 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 88558 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || | ||| ||||| || ||||| ||||| ||| Sbjct 88557 GACACTATTGA--CAATGTCAAAGCTAAGATTCA-AGACAAGGAGGGGATCCCACCGGAC 88501 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| ||||| | || |||| ||| || | | ||||| Sbjct 88500 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTAT 88441 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || ||| | || || Sbjct 88440 AATATCCAGAACGAGTCCACTCTCCATCTTGTCCT 88406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || | || || ||| ||| Sbjct 88845 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACGATAACTTTGGAGGTCGAGAGCTCT 88786 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| ||||| ||||||||||| || || || Sbjct 88785 GATACGATTGACAATGTGAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCAGATCA 88727 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || ||||| || |||| | ||| ||| |||||||| Sbjct 88726 GCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAA 88667 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||| || || || ||| | ||||| ||||| Sbjct 88666 CATCCAGAAAGAGTCGACTCTTCATCTGGTGCTCAGGCT 88628 >seq1231 Length=361431 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || |||||||||||| | | |||||||| || || ||||| ||| Sbjct 154489 GATAAGGAAGGCATCCCTCCTGACCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 154430 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | ||||| || |||||||| || || || || || || || | Sbjct 154429 GATGGTCGAACTCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGTTTTG 154370 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 154369 AGGCTGAGGGGAGGAA 154354 >seq736 Length=481145 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| | || || ||| || Sbjct 406248 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACTATCACTTTGGAGGTCGAGAGCTCG 406189 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || ||||| ||||| ||||| Sbjct 406188 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 406129 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | || || | || ||| ||| || |||||| Sbjct 406128 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGACGGCCGTACTTTGGCTGACTACAAT 406069 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 406068 ATTCAGAAGGAGTCTACCCTTCACCTTGTGCT 406037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433274406534620