Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7758 140 4e-28 seq853 136 4e-27 seq49 93.3 5e-14 seq721 91.5 2e-13 seq281 91.5 2e-13 seq705 89.7 6e-13 seq26 89.7 6e-13 seq1736 87.8 2e-12 seq1627 86.0 7e-12 seq1101 86.0 7e-12 seq9106 84.2 2e-11 seq1025 84.2 2e-11 seq2253 82.4 8e-11 seq122 82.4 8e-11 >seq7758 Length=1097 Score = 140 bits (154), Expect = 4e-28 Identities = 402/611 (66%), Gaps = 13/611 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| |||||||| |||||| || ||||| || ||||| || |||||||| || Sbjct 402 GTACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGA 461 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | || || | | || || ||||| ||||||||||| | |||||| || Sbjct 462 GAACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCC 521 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || ||||| ||||||||| ||||| ||||| || || || ||||| | | || Sbjct 522 CGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGA 581 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | |||||| || ||||| | ||| || ||| | | || || | || || Sbjct 582 ---GCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATC 638 Query 93322 GATAGCGTTAAATAG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 ||| || | ||| || | ||| |||||| || || ||||| || || | | | Sbjct 639 GATCGCATGAAAAAGCCTGTTCT-TCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGA 697 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| |||||||| || || Sbjct 698 GGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAG 757 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| ||||| | || || | ||||||| || || || || | Sbjct 758 CCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGT 817 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC---ATCTTTAA 93557 | || || || || || || | | || | || || || ||||| | || || Sbjct 818 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAA 877 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||||| | | ||| || | | | ||| || || ||| | ||||| || || | Sbjct 878 G---TTCCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGG 934 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAA 93676 | || || || |||||||| ||||| || || | ||||| || || || || ||| ||| Sbjct 935 CCTCGGCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT-ACAGAAA 993 Query 93677 CGATTAGGGTT 93687 || | ||||| Sbjct 994 CGGTCCGGGTT 1004 >seq853 Length=703183 Score = 136 bits (150), Expect = 4e-27 Identities = 388/592 (66%), Gaps = 11/592 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| |||||||| |||||| || ||||| || ||||| || |||||||| || Sbjct 573538 GTACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGA 573597 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | || || | | || || ||||| ||||||||||| | |||||| || Sbjct 573598 GAACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCC 573657 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || ||||| ||||||||| ||||| ||||| || || || ||||| | | || Sbjct 573658 CGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGA 573717 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | |||||| || ||||| | ||| || ||| | | || || | || || Sbjct 573718 ---GCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATC 573774 Query 93322 GATAGCGTTAAATAG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 ||| || | ||| || | ||| |||||| || || ||||| || || | | | Sbjct 573775 GATCGCATGAAAAAGCCTGTTCT-TCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGA 573833 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| |||||||| || || Sbjct 573834 GGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAG 573893 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| ||||| | || || | ||||||| || || || || | Sbjct 573894 CCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGT 573953 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC---ATCTTTAA 93557 | || || || || || || | | || | || || || ||||| | || || Sbjct 573954 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAA 574013 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||||| | | ||| || | | | ||| || || ||| | ||||| || || | Sbjct 574014 G---TTCCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGG 574070 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 | || || || |||||||| ||||| || || | ||||| || || || || Sbjct 574071 CCTCGGCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 574122 >seq49 Length=410483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 288949 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 289006 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||| || |||||| ||| ||||||| Sbjct 289007 GTGGGTTCAAATCCCACAGCTGTCAAATTA 289036 >seq721 Length=774050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 243660 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 243601 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| || || Sbjct 243600 GTGGGTTCAAATCCCACTTCTGACAATTTCTT 243569 >seq281 Length=555850 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 164466 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 164407 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 164406 GCGTGGGTTCAAATCCCACTTCTGACA 164380 >seq705 Length=249353 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 193688 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 193747 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 193748 CGTGGGTTCAAATCCCACTTCTGACA 193773 >seq26 Length=843838 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 394788 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 394847 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTAT-TATT 126357 ||||||| || ||||| ||||||| | || |||| Sbjct 394848 TGGGTTCAAATCCCACTTCTGACAATTCATGTATT 394882 >seq1736 Length=721458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 514789 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 514730 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 514729 GTGGGTTCAAATCCCACTTCTGACA 514705 >seq1627 Length=130571 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 39133 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 39076 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||| ||| || Sbjct 39075 GCGTGGGTTCAAATCCCACTTCTGACATATTTTT 39042 >seq1101 Length=1040609 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 673126 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 673067 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 673066 TGGGTTCAAATCCCACTTCTGACA 673043 >seq9106 Length=1488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCGTGG 126326 ||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||||| Sbjct 1488 AGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCGTGG 1429 Query 126327 GTTCGAACCCCACACCTGACAAATTAT-TATT 126357 |||| || ||||| ||||||| | || |||| Sbjct 1428 GTTCAAATCCCACTTCTGACAATTCATGTATT 1397 >seq1025 Length=727030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 357522 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 357579 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| | ||| || |||| ||||| Sbjct 357580 TTCAAATCCCACAGCTGTC--ATTCTTTTTGGTGTTTTT 357616 >seq2253 Length=587128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 485321 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 485262 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 485261 GCGTGGGTTCAAATCCCACTTCTGACA 485235 >seq122 Length=589495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 382779 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 382836 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| || || |||| | ||||||| Sbjct 382837 GGGTTCAAATCCCACAGCTGTCATAACAATTA-TACAATTTTT 382878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556790162207520