Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2255 104 2e-17 seq486 91.5 1e-13 seq297 91.5 1e-13 seq736 86.0 5e-12 seq176 86.0 5e-12 seq1231 82.4 6e-11 >seq2255 Length=141741 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || |||||||||||| Sbjct 95360 ATACCACCACGGAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCG 95301 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || ||||| |||| || | ||| ||||| || Sbjct 95300 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 95241 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 95240 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCA 95181 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || ||||| ||||| |||||||| Sbjct 95180 ACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 95131 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||||||||| ||||| || || Sbjct 96044 ATACCACCACGCAGCCGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCA 95985 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || ||||||||| ||||||| | ||| |||||||| Sbjct 95984 GCAAGGGTGCGTCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGG 95925 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | |||| ||| || | | ||| Sbjct 95924 GGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCTGAGCTTTCA 95865 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || || || ||||| || ||||| Sbjct 95864 ACTTCCAAGGTGATTGTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 95815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | || | ||||| || || |||||||||||||| Sbjct 96498 ACCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGC 96439 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | ||| ||||| || ||||| || ||||||| | ||| ||||| ||||| Sbjct 96438 AAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 96379 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| |||||| || | | |||| || || | || || Sbjct 96378 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATTGTATCCGAACTCTCCAC 96319 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| |||||||| || ||||| |||||||| Sbjct 96318 CTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 96271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| ||||| ||||| | || || ||| ||||| || |||||| Sbjct 140047 GTTGATTCCTTTTGGATGTTATAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 140106 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| |||||||| ||||||||||| || || ||| ||| || Sbjct 140107 GCGAAGATTAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTATCCTGAATTTTTGCCTTG 140166 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | | ||| || |||| ||| | ||| || || || || || Sbjct 140167 ACATTATCTATGGTATCCGAGCTTTCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGTC 140226 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 140227 TTGACAAAGATTTGCAT 140243 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | || | || || || || |||||||||||||| Sbjct 139560 ACCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGC 139619 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | || || || || ||||| || ||||||| | || ||||||||||| Sbjct 139620 AAGAGTCCTCCCGTCCTCCAGCTGCTTACCCGCAAAGATGAGCCTTTGCTGGTCCGGAGG 139679 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| |||||| ||| | | |||| ||| || | || || Sbjct 139680 AATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATTATCAATGGTATCAGAACTCTCCAC 139739 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||| || || || || || || ||||| |||||||| Sbjct 139740 CTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 139787 >seq486 Length=243247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||||||| || ||| | | |||||| | || || ||| Sbjct 20079 GTAGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTACCATCTTCCAACTGCTTTCCA 20138 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | ||| ||||| || ||||| || || || || ||| || || || Sbjct 20139 GCAAATATAAGCCTCTGCTGGTCAGGCGGAATCCCCTCCTTATCCTGTATC-TTAGTCTT 20197 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||| | | || || || | ||| || || |||||||| || || Sbjct 20198 GACAATATCAATAGTGTCCGAGCTCTCCACCTCAAGGGTGACAGTCTTGCCGGTAAGGGT 20257 Query 114365 TTTTACAAAAATCTGCATG 114383 ||| ||||| ||||||||| Sbjct 20258 TTTCACAAATATCTGCATG 20276 >seq297 Length=529300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||||||| | || || || || || || || || Sbjct 439842 GTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCG 439783 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || |||||||| || ||||| ||||| || Sbjct 439782 GCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTC 439723 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| ||||| || | ||| | || || || || || ||| Sbjct 439722 ACATTGTCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTT 439663 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 439662 TTCACGAAGATCTGCATG 439645 >seq736 Length=481145 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || || || || |||||||| || Sbjct 406931 ATACCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCT 406990 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || || || || || || ||| ||||||||||||| || || ||| Sbjct 406991 GCGAGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGA 407050 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | || || Sbjct 407051 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCC 407110 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || ||||| || || || ||||| Sbjct 407111 ACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 >seq176 Length=136227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | ||| | || || ||||| || ||||||||||| Sbjct 88616 ATGCCACCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCC 88675 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | ||| || | ||| || ||||| |||| || | ||| || || ||| Sbjct 88676 GCCAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGA 88735 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| || || | | ||| Sbjct 88736 GGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCG 88795 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || || || || || || ||||||||||| Sbjct 88796 ACCTCCAAAGTTATCGTCTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 88845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || ||| || || | || || || ||||| ||||||||||| Sbjct 88844 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 88903 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | || || | ||| ||||| ||| |||| || | ||| || || || Sbjct 88904 GCAAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 88963 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| | ||| Sbjct 88964 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCG 89023 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| || ||||| || ||||||||||| Sbjct 89024 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq1231 Length=361431 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||| || || | || || || ||||||||||| ||||| | ||| ||| Sbjct 154365 AGCCTCAAAACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGCAAGAGTTCGA 154424 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||| |||||||| | || | | ||||||||| ||||| |||||||| Sbjct 154425 CCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGGTCAGGAGGGATGCCTTCC 154484 Query 114285 TTGTC 114289 || || Sbjct 154485 TTATC 154489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420082438302576