Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7758 271 1e-67 seq853 271 1e-67 >seq7758 Length=1097 Score = 271 bits (300), Expect = 1e-67 Identities = 587/867 (68%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| ||| |||||| |||||||||||||| || |||| ||||||||| Sbjct 978 GATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGC 919 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 ||||||| |||| | | ||||| ||| | |||||| || | ||| Sbjct 918 CGAGGAGGTTGATTTATGCCAGGACCTACGCCA--CTGGGAACTTCTAGCCCCCGGCGAG 861 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| ||| ||| || | || ||||||||||| |||||||||||||| || ||| Sbjct 860 AAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATTGTTTTGGAG 801 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 || || ||| ||||||||||| || || ||| || ||||| || |||||||||| Sbjct 800 AATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGAGCCTTCTACGGC 741 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||| | ||||| ||| ||||| | || || | || ||| Sbjct 740 TTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTAC 681 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| | | |||| ||| |||| || | || || || || || |||||| || Sbjct 680 ATCAAGGACTCAGACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCGTC 621 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | ||||||||| | ||||| || ||||||||| | | || | |||| | ||| Sbjct 620 ACGAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCAGA---ATCGTTTGCGGAG 564 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || | || |||||| | ||| || || || ||||||||||| || | | || Sbjct 563 CGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATA 504 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||| ||| || | || ||||| ||||| || ||||| ||||| | ||| Sbjct 503 TTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCG 444 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | || ||||| |||| | ||||| || ||| | |||| |||| | || ||| | Sbjct 443 CGAGATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGTACTCG---CTGCTGAGGAAG 387 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG-GAGGCCGTGGAGATCGAGAAGGA 42940 |||| |||| ||||| | | ||||| ||| | || |||||||| |||| || Sbjct 386 AAGCTGAGCGAGGATCGGGTGAAGTCGATCAT-ACGAAACGCGGTGGAGATAGAGAGAGA 328 Query 42941 GTTCCT-CACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||| | || || || | ||||| ||||||| || |||||| ||| || ||| || Sbjct 327 GTTCGTGTGCGAAG-CG-TTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGC 270 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| ||| || || || ||| || | || | | | ||| Sbjct 269 CAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTAC 210 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || | ||| ||||| | |||||| ||| ||| |||| |||||||| || Sbjct 209 AATGTGCAGAACCCGTTCGAATGGATGGAGCTGATCAGCTTGCAGGGGAAGACCAATTTC 150 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| | || | || |||||| Sbjct 149 TTCGAGAAGAGGGTTGGGGAGTACCAG 123 >seq853 Length=703183 Score = 271 bits (300), Expect = 1e-67 Identities = 587/867 (68%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| ||| |||||| |||||||||||||| || |||| ||||||||| Sbjct 574114 GATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGC 574055 Query 42344 CGAGGAGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 ||||||| |||| | | ||||| ||| | |||||| || | ||| Sbjct 574054 CGAGGAGGTTGATTTATGCCAGGACCTACGCCA--CTGGGAACTTCTAGCCCCCGGCGAG 573997 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| ||| ||| || | || ||||||||||| |||||||||||||| || ||| Sbjct 573996 AAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATTGTTTTGGAG 573937 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 || || ||| ||||||||||| || || ||| || ||||| || |||||||||| Sbjct 573936 AATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGAGCCTTCTACGGC 573877 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||| | ||||| ||| ||||| | || || | || ||| Sbjct 573876 TTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTAC 573817 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| | | |||| ||| |||| || | || || || || || |||||| || Sbjct 573816 ATCAAGGACTCAGACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCGTC 573757 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | ||||||||| | ||||| || ||||||||| | | || | |||| | ||| Sbjct 573756 ACGAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCAGA---ATCGTTTGCGGAG 573700 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || | || |||||| | ||| || || || ||||||||||| || | | || Sbjct 573699 CGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATA 573640 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||| ||| || | || ||||| ||||| || ||||| ||||| | ||| Sbjct 573639 TTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCG 573580 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | || ||||| |||| | ||||| || ||| | |||| |||| | || ||| | Sbjct 573579 CGAGATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGTACTCG---CTGCTGAGGAAG 573523 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG-GAGGCCGTGGAGATCGAGAAGGA 42940 |||| |||| ||||| | | ||||| ||| | || |||||||| |||| || Sbjct 573522 AAGCTGAGCGAGGATCGGGTGAAGTCGATCAT-ACGAAACGCGGTGGAGATAGAGAGAGA 573464 Query 42941 GTTCCT-CACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||| | || || || | ||||| ||||||| || |||||| ||| || ||| || Sbjct 573463 GTTCGTGTGCGAAG-CG-TTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGC 573406 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| ||| || || || ||| || | || | | | ||| Sbjct 573405 CAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTAC 573346 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || | ||| ||||| | |||||| ||| ||| |||| |||||||| || Sbjct 573345 AATGTGCAGAACCCGTTCGAGTGGATGGAGCTGATCAGCTTGCAGGGGAAGACCAATTTC 573286 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| | || | || |||||| Sbjct 573285 TTCGAGAAGAGGGTTGGGGAGTACCAG 573259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944219410572480