Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2255 87.8 1e-12 seq113 87.8 1e-12 seq176 84.2 2e-11 >seq2255 Length=141741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 20/241 (8%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| ||| ||||||||||||||||||||| Sbjct 139557 GAAACCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC 139616 Query 33957 TGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 || ||| || | | |||| |||| ||||| || ||||| || || | ||||| ||| Sbjct 139617 TG-CAAGAGTCCTCCCGTCCTCCAGCTGCTTACCCGCAAAGATGAGCCTTTGCTGGTCCG 139675 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATT 34075 || | || ||| |||||| | | | || |||| ||||| ||||| | | | Sbjct 139676 GAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTT--------TCACATTATCAATGGTAT 139726 Query 34076 C---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCA 34126 | | || ||| ||||| || || || || || || ||||||||||| |||| Sbjct 139727 CAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCA 139786 Query 34127 T 34127 | Sbjct 139787 T 139787 >seq113 Length=202937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 28787 CCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGCA 28846 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || ||||||||||| || ||||| |||| | |||||| || Sbjct 28847 AGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGGTC 28899 >seq176 Length=136227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| |||||||||||||| || ||| ||||| ||||||||||| ||| | ||| Sbjct 88628 AGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCC-AGAGTCCT 88686 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || ||||||||||| || ||||| ||||| | ||||||||| Sbjct 88687 TCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATC 88731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397013291818696