Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7758 104 3e-17 seq853 104 3e-17 seq309 91.5 2e-13 >seq7758 Length=1097 Score = 104 bits (114), Expect = 3e-17 Identities = 366/566 (65%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||||||||| || |||||||| | ||||||||| |||||| Sbjct 126 GTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCTGATCAGCTCCAT 185 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 | || || ||||||| || | || | ||||| || || || | Sbjct 186 CCATTCGAACGGGTTCTGCACATTGTACATCTTCCCGTACCCAAGCTCAGCCAGCAGCCT 245 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||||| ||| |||| ||||||| ||| || |||||| || | ||| || Sbjct 246 ATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCACCAGGGCGCA 305 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || | ||| || | | |||| | |||| || ||||| || | || | ||| | | Sbjct 306 CGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTATGATCGACTT 365 Query 125998 AATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTCT 126055 | ||| | | ||| | | || | || | | | || |||| | || || Sbjct 366 CACCCGATCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAGCACG-CGAAGTCG 423 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 ||| | |||||| || || ||||| | || || ||||| |||||| ||||| | Sbjct 424 CAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAAC 483 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || |||||||| | ||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 484 CCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACG 543 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTTC 126232 || || || || | || ||||| ||||| ||| | || ||| | ||| Sbjct 544 CAAGCAAAGGCCACGATCCGCTCCGCAAA------CGATTCTGAGCCGTCGATCCAGCGT 597 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 126292 | |||||||| ||||| ||| || || || | ||| | |||||| | ||| || Sbjct 598 AGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTG 657 Query 126293 TTCTTTTCTGATGGATCTTTGATGTA 126318 ||||| || || || |||||||| Sbjct 658 TTCTTCTCGTCTGAGTCCTTGATGTA 683 >seq853 Length=703183 Score = 104 bits (114), Expect = 3e-17 Identities = 366/566 (65%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||||||||| || |||||||| | ||||||||| |||||| Sbjct 573262 GTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCTGATCAGCTCCAT 573321 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 | || || ||||||| || | || | ||||| || || || | Sbjct 573322 CCACTCGAACGGGTTCTGCACATTGTACATCTTCCCGTACCCAAGCTCAGCCAGCAGCCT 573381 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||||| ||| |||| ||||||| ||| || |||||| || | ||| || Sbjct 573382 ATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCACCAGGGCGCA 573441 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || | ||| || | | |||| | |||| || ||||| || | || | ||| | | Sbjct 573442 CGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTATGATCGACTT 573501 Query 125998 AATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTCT 126055 | ||| | | ||| | | || | || | | | || |||| | || || Sbjct 573502 CACCCGATCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAGCACG-CGAAGTCG 573559 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 ||| | |||||| || || ||||| | || || ||||| |||||| ||||| | Sbjct 573560 CAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAAC 573619 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || |||||||| | ||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 573620 CCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACG 573679 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTTC 126232 || || || || | || ||||| ||||| ||| | || ||| | ||| Sbjct 573680 CAAGCAAAGGCCACGATCCGCTCCGCAAA------CGATTCTGAGCCGTCGATCCAGCGT 573733 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 126292 | |||||||| ||||| ||| || || || | ||| | |||||| | ||| || Sbjct 573734 AGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTG 573793 Query 126293 TTCTTTTCTGATGGATCTTTGATGTA 126318 ||||| || || || |||||||| Sbjct 573794 TTCTTCTCGTCTGAGTCCTTGATGTA 573819 >seq309 Length=181836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||| | ||| || ||| || || | || || |||||| ||||| || |||| Sbjct 48115 CGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCCA 48057 Query 11055 CAAACATTTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 |||||| |||||| || | || || ||| || | || || || || | || | Sbjct 48056 CAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTCGC 48000 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | ||| || || || |||||||| || || |||||| Sbjct 47999 CGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 47959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597277825695840