Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2255 118 1e-21 seq736 118 1e-21 seq297 93.3 5e-14 seq49 89.7 6e-13 >seq2255 Length=141741 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||||||||||||||| || || | || || |||||||| ||||| || Sbjct 140281 TCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 140340 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | ||||||||| | ||| | || ||| ||||| ||| || |||| | Sbjct 140341 ATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTAGCCTTGACATTA 140400 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | |||||| |||| || || || | |||||||| || || || || ||||| Sbjct 140401 TCAATCGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTA 140457 Query 42195 ACAAAGATTTGCATT 42209 ||||| ||||||||| Sbjct 140458 ACAAATATTTGCATT 140472 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 96462 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 96403 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 96402 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 96344 Query 42136 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | ||| ||||| ||||| || || |||| Sbjct 96343 TATCAATTGTATC---CGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCT 96287 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 96286 TCACAAAGATCTGCAT 96271 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| || || ||||| || || || ||||| || || || | || || Sbjct 96024 CACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 95965 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||||||||| ||||| | ||||||||| | || | || |||||||||| Sbjct 95964 AAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 95905 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 95904 GATCTTTGCCTTGACATTGTCAATGGTATCTGAGCT---TTCAACTTCCAAGGTGATTGT 95848 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||||||||| Sbjct 95847 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 95815 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | ||||| ||||| || |||||||| || || |||||||| || || || Sbjct 140026 AACCGAAGCACCAGGTGCAAAGTTGATTCCTTTTGGATGTTATAATCAGCAAGGGTGCGG 140085 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || ||||||||||||||||| || || | ||||||||| | || | || ||| Sbjct 140086 CCATCCTCAAGCTGCTTACCAGCGAAGATTAGCCTCTGCTGGTCCGGGGGAATGCCTTCC 140145 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGAC 42166 || ||| ||| |||||| |||| | | | || || ||| ||| || || | Sbjct 140146 TTATCC-TGAATTTTTGCCTTGACATTATCTATGGTATCCGAGCT---TTCAACCTCCAA 140201 Query 42167 CGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || || || ||||| |||||||||||||| Sbjct 140202 GGTTATCGTCTTCCCAGTAAGTGTCTTGACAAAGATTTGCAT 140243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 139596 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCCGCAAA 139655 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 139656 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 139714 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 139715 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 139771 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 139772 TCACAAAGATCTGCAT 139787 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| |||||||||||| ||||| ||||| || |||| |||| || Sbjct 96252 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCGTCCTC 96193 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 96192 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 96133 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 |||||| || | | | | || || ||| |||||| || | || ||||| Sbjct 96132 GATTTTGGCCTTCACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 96076 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || ||||| || ||||| Sbjct 96075 TTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || || | ||| || || | ||| |||||| || || ||||| || || Sbjct 95814 ACCACCACGTAGTCGGAGCACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 95755 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || ||||| ||||||||||| | || Sbjct 95754 AAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGG 95695 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| ||| |||| | | | || || ||| ||| Sbjct 95694 AATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATAGTATCCGAGCT---TTC 95638 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| |||||||| ||||| Sbjct 95637 AACTTCCAAGGTGATTGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 95587 >seq736 Length=481145 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || |||||| || || ||||| || || || || || | Sbjct 406945 ACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCC 407004 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| ||||||||||| || ||||| ||||| |||||||| || | || | || |||||| Sbjct 407005 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATGCCCTCCTT 407064 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | ||||| || ||||| || | |||| Sbjct 407065 GTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGA 407123 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || || || || ||||||||||| Sbjct 407124 TGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| ||| | || | || |||||| ||||||||||| ||||| Sbjct 406021 ACCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGC 406080 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || |||||||| || || || || | | ||||||||| | ||| Sbjct 406081 CAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTGG 406140 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || || | | | | ||||| |||| || Sbjct 406141 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGCTC---TC 406197 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 406198 GACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 406248 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || || ||||||||||||| | || || | ||||||||| || || Sbjct 405829 CTCCTTCTGAATGTTATAGTCAGCCAGAGTCCTTCCATCCTCCAACTGCTTACCGGCAAA 405888 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 405889 GATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 405947 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | |||||||| || || || | |||| Sbjct 405948 TGTCGATTGTGTCCGAGCTC---TCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCT 406004 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 406005 TCACAAAGATCTGCAT 406020 >seq297 Length=529300 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 439836 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 439777 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 439776 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 439717 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 439716 TCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 439657 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 439656 AAGATCTGCATGTT 439643 >seq49 Length=410483 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || || || ||||||| || || | || || |||||||| ||||| || Sbjct 303009 CCTTTCTGGATGTTATAGTCAGCCAAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAA 302950 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||| | ||| | || ||||||||| ||| || |||| | Sbjct 302949 ATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 302890 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| || || |||| |||||||| || || ||||| ||||| || Sbjct 302889 TCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTCTTCACG 302830 Query 42198 AAGATTTGCATTTT 42211 || || ||||| || Sbjct 302829 AAAATCTGCATCTT 302816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543143893456320