Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq736 98.7 1e-15 seq853 96.9 3e-15 seq7758 93.3 4e-14 seq2255 89.7 5e-13 seq176 86.0 6e-12 seq486 84.2 2e-11 seq405 82.4 8e-11 >seq736 Length=481145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | ||||| || | | |||||||||| || ||||||||||| Sbjct 406705 GCCACCACGCAGACGAAGCACTAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGC 406764 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || || || |||| |||| || | ||| ||||| || || Sbjct 406765 GAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 406824 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| |||| | || | ||| || | |||||||| || Sbjct 406825 GATACCTTCCTTGTC-TTGAATTTTGGCCTTGACGTTG-TCAATGGTGTCGGAGCTTTCG 406882 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || ||||| || || || || || || |||||||| Sbjct 406883 ACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 406932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 406934 CCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCG 406993 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || |||| |||| |||||||| || || ||||| Sbjct 406994 AGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGG 407053 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 407054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 407113 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| || || || ||||| Sbjct 407114 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 >seq853 Length=703183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 404/621 (65%), Gaps = 30/621 (5%) Strand=Plus/Minus Query 52229 CATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTG-ATAAAAGA-T 52286 ||||||| | | ||| | |||||||||| || ||| | ||| | || || || || | Sbjct 573865 CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAG-ACCTACATCAAGGACT 573807 Query 52287 GAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAG 52346 || ||||| ||| ||| | ||||| |||| | | || ||||| || ||| Sbjct 573806 CAG-ACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCGTCACGAAGAAG 573748 Query 52347 GCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTG 52406 || |||||||| | |||||||| || | | | || | || ||||| || ||| Sbjct 573747 GCCCAGTGGGCCCTACGCTGGATCGA---CGGCTCAGAATCGTTTGCGGAGCGGATCGTG 573691 Query 52407 GCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATT 52466 ||||| || || || || | || || || || || ||| ||| || |||| | Sbjct 573690 GCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCTA 573631 Query 52467 AAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAA 52526 || | | || ||||||| || ||||||||| ||||||||||| ||||| || || Sbjct 573630 AAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCGCGAGATGAG 573571 Query 52527 GGACTGCACACGGACTTTGCGTGC---CTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 || ||||| ||||| |||||| || |||| ||| ||| ||| || Sbjct 573570 GGTTTGCACTGCGACTTCGCGTGCTTGCTGTACT------CGCTGCTGA-GGAAGAAGCT 573518 Query 52584 GATTCGGACACGATC--CTGAGCATGTTCA-AGG--AGGCGGTGGCTATCGAAAAGGAGT 52638 || | | |||| ||| | ||| | | | ||||||| || || | |||| Sbjct 573517 GA----GCGAGGATCGGGTGAAGTCGATCATACGAAACGCGGTGGAGATAGAGAGAGAGT 573462 Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-CATGTGCGAG 52697 | | | ||| | ||| || ||| |||| ||||||| || || ||| || || Sbjct 573461 TCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACG-GCGATCTAATGAGCCAG 573403 Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAAC 52757 ||||||||||| ||||||||| | ||| ||| |||| ||| | ||| | ||| Sbjct 573402 TACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAAT 573343 Query 52758 GCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG-AGGGCAAGACCAACTTTTT 52816 | | || ||||| |||| ||| | | | ||||| |||| |||||||| || || Sbjct 573342 GTGCAGAACCCGTTCGAGTGGATGGAGCTGA-TCAGCTTGCAGGGGAAGACCAATTTCTT 573284 Query 52817 CGAGAAGCGAGTCGGCGAGTA 52837 ||||||| | || || ||||| Sbjct 573283 CGAGAAGAGGGTTGGGGAGTA 573263 >seq7758 Length=1097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 403/621 (65%), Gaps = 30/621 (5%) Strand=Plus/Minus Query 52229 CATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTG-ATAAAAGA-T 52286 ||||||| | | ||| | |||||||||| || ||| | ||| | || || || || | Sbjct 729 CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAG-ACCTACATCAAGGACT 671 Query 52287 GAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAG 52346 || ||||| ||| ||| | ||||| |||| | | || ||||| || ||| Sbjct 670 CAG-ACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCGTCACGAAGAAG 612 Query 52347 GCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTG 52406 || |||||||| | |||||||| || | | | || | || ||||| || ||| Sbjct 611 GCCCAGTGGGCCCTACGCTGGATCGA---CGGCTCAGAATCGTTTGCGGAGCGGATCGTG 555 Query 52407 GCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATT 52466 ||||| || || || || | || || || || || ||| ||| || |||| | Sbjct 554 GCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCTA 495 Query 52467 AAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAA 52526 || | | || ||||||| || ||||||||| ||||||||||| ||||| || || Sbjct 494 AAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCGCGAGATGAG 435 Query 52527 GGACTGCACACGGACTTTGCGTGC---CTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 || ||||| ||||| |||||| || |||| ||| ||| ||| || Sbjct 434 GGTTTGCACTGCGACTTCGCGTGCTTGCTGTACT------CGCTGCTGA-GGAAGAAGCT 382 Query 52584 GATTCGGACACGATC--CTGAGCATGTTCA-AGG--AGGCGGTGGCTATCGAAAAGGAGT 52638 || | | |||| ||| | ||| | | | ||||||| || || | |||| Sbjct 381 GA----GCGAGGATCGGGTGAAGTCGATCATACGAAACGCGGTGGAGATAGAGAGAGAGT 326 Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-CATGTGCGAG 52697 | | | ||| | ||| || ||| |||| ||||||| || || ||| || || Sbjct 325 TCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACG-GCGATCTAATGAGCCAG 267 Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAAC 52757 ||||||||||| ||||||||| | ||| ||| |||| ||| | ||| | ||| Sbjct 266 TACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAAT 207 Query 52758 GCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG-AGGGCAAGACCAACTTTTT 52816 | | || ||||| || | ||| | | | ||||| |||| |||||||| || || Sbjct 206 GTGCAGAACCCGTTCGAATGGATGGAGCTGA-TCAGCTTGCAGGGGAAGACCAATTTCTT 148 Query 52817 CGAGAAGCGAGTCGGCGAGTA 52837 ||||||| | || || ||||| Sbjct 147 CGAGAAGAGGGTTGGGGAGTA 127 >seq2255 Length=141741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 96497 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 96438 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || || ||||||| | |||| || | ||| ||||| ||||| Sbjct 96437 AGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 96378 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | || | | || | || || | |||||| Sbjct 96377 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTATCAATTGTATCCGAACTCTCCAC 96319 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || ||||||||||| || ||||| |||||||| Sbjct 96318 CTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 96271 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 139561 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCA 139620 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| || || ||||| | | |||| || | || ||||||||||| Sbjct 139621 AGAGTCCTCCCGTCCTCCAGCTGCTTACCCGCAAAGATGAGCCTTTGCTGGTCCGGAGGA 139680 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | ||| || | |||||| Sbjct 139681 ATGCCCTCCTTGTC-CTGAATCTTAGCTTTCACATTATCAATGGTATCAGAACTCTCCAC 139739 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || ||||| || || || ||||| |||||||| Sbjct 139740 CTCCAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 139787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || | ||||||||| || || || | | Sbjct 96236 GACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCA 96177 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || ||||| || ||||| |||||| || | Sbjct 96176 AAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACA 96117 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||||| || | || | ||||| |||||||||||||| Sbjct 96116 TTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTC 96057 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 96056 ACAAATATCTGCAT 96043 >seq176 Length=136227 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| ||| || || | ||||||||||||| |||||||| || Sbjct 88847 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 88906 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| | ||| ||||||| |||| || | ||| || || || || Sbjct 88907 AGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 88966 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||| |||| ||| ||| Sbjct 88967 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACC 89026 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || ||||| || ||||||||||| Sbjct 89027 TCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq486 Length=243247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||| || | | | ||||| || || ||||| || || | Sbjct 17881 CCCCCACGAAGACGAAGCACTAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCC 17940 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| ||||| || || | | | || || | ||| || |||||||| Sbjct 17941 AGGGTACGTCCGTCCTCAAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGGG 18000 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 | ||| |||||||| |||||| ||| | ||||| | | || || | || || Sbjct 18001 AAACCCTCTTTGTCTTGGATTTTAGCTTTCACATTGT-CAATTGTATCAGAACCATCAAC 18059 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||||||||| |||||||||||||| Sbjct 18060 ATCAAGAGTGATTGTCTTCCCAGTCAGAGTTTTGACAAAAATCTGCAT 18107 >seq405 Length=713653 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| ||| | || || ||||||||| || || || | Sbjct 410340 GATTCCTTCTGGATGTTGTAGTCAGCT-AGGGTTCGGCCGTCCTCGAGCTGCTTCCCTGC 410398 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 |||| ||||| || ||||| || || || || || ||||| ||| || ||| | Sbjct 410399 GAAGATGAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCAC 410458 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||||| ||||| | || | || || || || || |||| Sbjct 410459 ATTG-TCGATGGTGTCCGAAGACTCAACCTCTAGGGTTATAGTCTTCCCCGTTAGGGTTT 410517 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 410518 TGACGAAGATCTGCAT 410533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496199449114560