Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2255 105 5e-18 seq176 86.0 4e-12 seq736 82.4 5e-11 seq297 82.4 5e-11 >seq2255 Length=141741 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || | || || || || || || || ||||| |||||||| || Sbjct 96269 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 96210 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || |||| || | || ||||| || | ||||| | ||| ||||| ||| Sbjct 96209 AGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 96150 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || |||||||| |||| || Sbjct 96149 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACT 96090 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 96089 TCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCATA 96042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || || || || ||||| || || || || |||||||||||| | Sbjct 95357 CCACCACGGAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 95298 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | || |||||||| | |||| | ||| ||||| ||| Sbjct 95297 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 95238 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| ||| | || || || || |||| || Sbjct 95237 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAACC 95178 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| ||||| || ||||| Sbjct 95177 TCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 95131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 96473 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 96414 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | | ||| ||||| ||||| || |||||||| ||| ||| Sbjct 96413 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTG 96354 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | | || || || || || ||||| || || ||| Sbjct 96353 GCCTTCACATTATCAATTGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTC 96294 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 96293 AGAGTCTTCACAAAGATCTGCAT 96271 >seq176 Length=136227 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | |||||| || || ||||| || ||||||||||| Sbjct 88617 TGCCACCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCG 88676 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || ||||| || ||||| | |||| | ||| || || | Sbjct 88677 CCAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 88736 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || ||| | || || ||||| | || | Sbjct 88737 GAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGA 88796 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || ||||| || || || || ||||| |||||| Sbjct 88797 CCTCCAAAGTTATCGTCTTCCCTGTAAGGGTCTTCACGAAAATCTGCATA 88846 >seq736 Length=481145 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | ||||| || ||||| || || || || |||||||| || Sbjct 406704 TGCCACCACGCAGACGAAGCACTAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTG 406763 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | || ||||| ||| | |||| | ||| ||||| | Sbjct 406764 CGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGG 406823 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||||| || || | || || || ||| |||| | Sbjct 406824 GGATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 406883 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| ||||| || || || || || || || |||||| Sbjct 406884 CCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATA 406933 >seq297 Length=529300 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||||||| || ||| |||| || | || Sbjct 439848 TGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGC 439789 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | ||||| ||||| ||||| || |||||||| || ||| Sbjct 439788 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 439729 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || |||| ||||||||| ||||| || Sbjct 439728 GCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTT 439669 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 439668 AGGGTTTTCACGAAGATCTGCATGTTTG 439641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357347798204180