Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq176 120 3e-22 seq405 96.9 3e-15 seq2255 95.1 1e-14 seq486 91.5 1e-13 seq736 86.0 6e-12 >seq176 Length=136227 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| |||| ||||||||||||||||| || || ||| || |||| || ||| Sbjct 89093 ACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCC 89152 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| ||||||||| | ||||| | |||||||| || || ||||| || |||||||| Sbjct 89153 AATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCTTGG 89212 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | ||| || || ||||||||| || || | || || Sbjct 89213 ATCTTGGCCTTCA-CGTTGTCGATGGTATCAGAGCTCTCGACTTCTAGGGTTATTGTCTT 89271 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| || || |||||||| Sbjct 89272 CCCGGTTAGGGTTTTGACGAAGATTTGCAT 89301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| ||||| ||||||||||| || ||||| | ||| || || || ||||| Sbjct 88871 TGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTACCGTCCTCTAATTGC 88930 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | | ||||| || || || || || || || ||||| || || Sbjct 88931 TTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATCTTG 88990 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| ||||| |||||| || ||||||| ||||| ||||| Sbjct 88991 GCCTTCA-CGTTATCAATGGTATCGGAGCTCTCGACCTCCAGAGTAATTGTTTTCCCGGT 89049 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || ||||| ||||| Sbjct 89050 TAGGGTTTTGACGAAAATCTGCAT 89073 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || |||||||||||||| | ||| | ||| || Sbjct 88409 ACAAGATGGAGAGTGGACTCGTTCTGGATATTATAATCTGCAAGGGTACGACCATCCTCA 88468 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | ||||| | ||||||||||| || || || || || |||||| Sbjct 88469 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGA 88528 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||| || ||| || || ||||||| || || Sbjct 88529 ATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTC 88588 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| ||||| Sbjct 88589 CCAGTCAGGGTCTTCACAAAAATCTGCAT 88617 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| | |||| | || |||||||| Sbjct 89555 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAATTGC 89614 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | | ||||| || || ||||| || || || ||||| || || Sbjct 89615 TTGCCGGCGAAGATGAGCCTCTGCTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTG 89674 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| ||||| |||||| |||||||| | || ||||||||| Sbjct 89675 GCCTTGACATTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCGGTT 89734 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || | ||||| Sbjct 89735 AGGGTTTTGACGAAGACCTGCAT 89757 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || ||||||||||||||||| || ||| | ||| || |||||||| Sbjct 89327 TGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAATTGC 89386 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| | |||||||| || || ||||| || || ||||| ||||| Sbjct 89387 TTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATTTTG 89446 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | || || || ||||||||| | || | || || ||||| Sbjct 89447 GCCTTTA-CGTTGTCGATCGTATCAGAGCTCTCGACTTCTAAGGTTATGGTCTTCCCGGT 89505 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || ||||| Sbjct 89506 TAGGGTTTTGACGAAGATCTGCAT 89529 >seq405 Length=713653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 ||| || ||||| | | ||| || ||||| || |||||||| ||||| || || || || Sbjct 410306 TCCACCACGGAGACGAAGCACCAGGTGCAGAGTCGATTCCTTCTGGATGTTGTAGTCAGC 410365 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || || |||||| | || | ||||||||||| || | Sbjct 410366 T-AGGGTTCGGCCGTCCTCGAGCTGCTTCCCTGCGAAGATGAGACGTTGCTGGTCTGGGG 410424 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || ||||| || || ||| | || | |||||| |||||||| | Sbjct 410425 GGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTGTCCGAAGACTCAA 410484 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || | || || || ||||| ||||| || || || |||||| Sbjct 410485 CCTCTAGGGTTATAGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 410534 >seq2255 Length=141741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || |||| ||||||||||||||||| |||||||| | ||| ||| || Sbjct 140034 CACCAGGTGCAAAGTTGATTCCTTTTGGATGTTATAATCAGCAAGGGTGCGGCCATCCTC 140093 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | | ||||||||||| ||||||||||| ||||| || Sbjct 140094 AAGCTGCTTACCAGCGAAGATTAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTATCCTG 140153 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| |||| |||| ||| || || || || || | || | ||| || Sbjct 140154 AATTTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACCTCCAAGGTTATCGTCTT 140213 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| |||||||| Sbjct 140214 CCCAGTAAGTGTCTTGACAAAGATTTGCAT 140243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| ||||| || || || ||||| ||||| || || ||| Sbjct 140470 ATTCCACCGCGGAGTCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 140529 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || || | |||| | ||||||||||| Sbjct 140530 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 140589 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||| || || ||||| || | ||||| || || Sbjct 140590 GGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATCGTGTCAGAGCTTTCA 140649 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || ||||| || ||||| ||||| || |||||| Sbjct 140650 ACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATC 140700 >seq486 Length=243247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||||| |||||||||||||| | || | ||| || Sbjct 19580 ACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCTGCCAAAGTCCTGCCATCCTCA 19639 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || |||||||| | || | | ||| ||||| || || || ||||| || |||||| Sbjct 19640 AGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTGGGATCCCTTCCTTGTCTTGA 19699 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | |||| ||| || ||| ||| || || ||||| | || || Sbjct 19700 ATCTTTGCCTTCACATTGTCTATGGTATCTGAACCCTCCACCTCCAGAGTGATAGTCTTT 19759 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| || ||||| ||||||||| Sbjct 19760 CCAGTCAAAGTCTTGACAAATATTTGCATC 19789 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||||| ||||| |||||||| | ||| || ||| || Sbjct 19349 ACAAGATGCAAGGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTCCTACCATCCTCT 19408 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | | |||||||| || || || ||||||||||||||| Sbjct 19409 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGA 19468 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAG---TAACCGTT 45308 || || |||| |||| ||| || ||| ||| || || |||| | | || Sbjct 19469 ATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCCACCTCCAGAGTGATGATAGTC 19528 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || ||||| | ||||||| Sbjct 19529 TTTCCAGTCAAAGTCTTGACAAATACTTGCATC 19561 >seq736 Length=481145 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| || || ||||| ||||| ||||| || || || || ||| ||| || Sbjct 406723 CACTAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCCTC 406782 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| | |||||||| || || || ||||| || ||||| Sbjct 406783 CAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 406842 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||| |||| || | || | ||||||||| ||||| ||||| || | || | Sbjct 406843 AATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCT 406901 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || || || || ||||| Sbjct 406902 TACCGGTGAGGGTCTTGACGAAGATCTGCAT 406932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | ||| || || || ||||| ||||| || || || Sbjct 406247 ATACCACCACGGAGACGAAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 406306 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || ||||| | ||||| | |||||||||||| Sbjct 406307 GCGAGGGTACGGCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCCGGT 406366 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || |||| || | |||||| || |||| Sbjct 406367 GGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCG 406426 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || || || || || || || |||||||| ||||| Sbjct 406427 ACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 406476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451945863394080