Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq96 358 8e-94 >seq96 Length=556063 Score = 358 bits (396), Expect = 8e-94 Identities = 540/765 (71%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 6512 AAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTA 6571 ||||||| ||||| |||||| || || | | |||||| || ||||| || |||||| Sbjct 7695 AAATGTAACCAACATTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGCGATTA 7636 Query 6572 GCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTT 6631 | |||||||| ||||| || || || |||| || || | ||| || ||| |||||| Sbjct 7635 GTGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTATTT 7576 Query 6632 GATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGC 6691 | |||||||||||||| |||||||| |||| ||||||||| ||||||||||| | | Sbjct 7575 GCACCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGCACATAAC 7516 Query 6692 AATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTG 6751 | || | || || | || || || |||||||||||||| ||||| | ||||| || Sbjct 7515 AGAGCAGCGCCCAACACCCCAGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTA 7456 Query 6752 TGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCA 6811 || || || || | ||||| | ||| || ||||| ||||| |||||||| |||||| Sbjct 7455 TGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAACTGGGCGCA 7396 Query 6812 AAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATG 6871 || ||||||| |||| || || ||||| || || || ||| | ||||| ||| |||| Sbjct 7395 AAAAACCAACCAAACTGACCTAGCGGATAAATTAGGAATACATAAACAAAAACAACAATT 7336 Query 6872 GGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAA 6930 ||| ||| || ||||||||||| || || || | | || |||| || || | ||||| Sbjct 7335 CGACTAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAATAGATCGAGCAAGTTCAAA 7277 Query 6931 CTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAG 6990 || || | ||| |||||||| || | || || || || || || ||||||| |||||| Sbjct 7276 TTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCATGTAGAGCAACAAAAGTCCATAG 7217 Query 6991 TCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAG 7050 || || | ||| ||| || || ||||| || |||| ||||||||||| | | Sbjct 7216 ACCGCCTAATTGACACCAACGAGTAAAGTCTCCTTGTGCTTTAGGACCCCATAGTAACAA 7157 Query 7051 TAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCC 7110 || || ||| | | | | ||| ||||| || || || | || | || ||||| || Sbjct 7156 TAAAGAGTGTGCTAAACTATTAGCCGGAGTGGAAACTGCGACGGTTAAAAAGTTACAGCC 7097 Query 7111 CTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGT 7170 || | ||| ||| || | | || || ||||| || || || ||||| || || Sbjct 7096 TTCCAAATAGGAACTTGCTAATTCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGT 7037 Query 7171 GAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAAC 7230 | |||||| || | || | || ||| ||| || |||| || || |||||||| || Sbjct 7036 GGACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGAAATAGGCCAGACCAACCTAC 6977 Query 7231 AAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| || | || | | | ||||||||| | | |||||| Sbjct 6976 AAAAACAAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 6932 Score = 136 bits (150), Expect = 5e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| | || || ||||||||| || ||||| Sbjct 9127 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGATTATAAGGTTTTCATGAGGCTGATCT 9068 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||||||||| || || || || ||||| ||||| ||| Sbjct 9067 TGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAAAGTC 9008 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || |||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 9007 TCAAATTCAAGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 8948 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || ||||| | | |||| | |||| | | | | || || ||||| Sbjct 8947 TTCAGCGCCAGACCGACTACTCCAAGAGCACTCATCCACAAAACGGTTACTGGTACAAAT 8888 Query 6503 AGCATAAAGAAATGT 6517 | ||||||||||||| Sbjct 8887 AACATAAAGAAATGT 8873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622045883469120