Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq176 102 6e-17 seq2255 89.7 4e-13 >seq176 Length=136227 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||| || || ||||| |||||||| ||| ||||| ||||| || ||||| Sbjct 89303 CCGCCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCA 89362 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || |||||||| || ||| | || || || | |||||| || | ||| Sbjct 89363 AGGGTGCGGCCGTCCTCCAATTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 89422 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| ||||| || | ||| | | | || || | ||| || || Sbjct 89423 ATGCCCTCCTTGTCTTGGATTTTGGCCTTTA-CGTTGTCGATCGTATCAGAGCTCTCGAC 89481 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || |||| ||||| |||||||||||||| Sbjct 89482 TTCTAAGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 89529 >seq2255 Length=141741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || ||||| |||| || || ||||| || || || | Sbjct 139785 CATC-CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGT 139843 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | | |||| |||| || || || ||||||| || | |||||| || | Sbjct 139844 CGGCAAGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTG 139903 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 || | || || ||||| ||||| || | | ||| || || || | ||| Sbjct 139904 GAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATA--GTATCAGAGCT 139961 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| |||||||||||||| || || || |||||||| || ||||| ||||| Sbjct 139962 TTCCACTTCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 140015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347326637762084