Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2548 122 1e-22 seq309 98.7 1e-15 >seq2548 Length=43478 Score = 122 bits (134), Expect = 1e-22 Identities = 307/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || || || || | |||| ||||| || | | |||||| Sbjct 26649 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 26708 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||| | ||||||||| || | Sbjct 26709 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCCT---CCA 26765 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 26766 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 26825 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 ||| ||| || || |||| ||| ||||| || || || || || ||||||| Sbjct 26826 GGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 26883 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 26884 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 26942 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| || || | |||||||| || || ||||| ||| | || || | ||| Sbjct 26943 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 27002 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 ||||| || ||| || | | ||||| || | ||| | || ||||| | | Sbjct 27003 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCGGGCTTCTTCAAGAATTCCACGACC 27062 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || | || || | ||||| | || | ||| ||||||| Sbjct 27063 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 27103 >seq309 Length=181836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 251/379 (66%), Gaps = 5/379 (1%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| | Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||| || | | ||| | ||||| |||||||||||||||||||| || ||||| Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||||| | || || || | ||||| || | | || ||||| || Sbjct 48115 CGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCC 48058 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| ||||| || | || || | || || || || || || || || Sbjct 48057 ACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCCG 47998 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | ||| || || ||||| ||||| || ||||| || |||| | | || ||| Sbjct 47997 GCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACAGCCT 47938 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 ||| || ||||| ||| || ||| | || || | ||| | ||||| || | | Sbjct 47937 TTTGGGATTTTGGCTCCAAGGGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACC 47878 Query 16332 TCTTCCAATT-CATCTTTG 16349 || | || || || ||||| Sbjct 47877 TCCTGCAGTTCCAGCTTTG 47859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620663658826560