Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2548 122 1e-22 seq309 91.5 2e-13 seq7758 82.4 9e-11 seq853 82.4 9e-11 >seq2548 Length=43478 Score = 122 bits (134), Expect = 1e-22 Identities = 231/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || ||||| || | |||| ||||| || | |||||| Sbjct 26649 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 26708 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| || |||| |||||||| | ||||||||| || | Sbjct 26709 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCCT---CCA 26765 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | |||| ||| || |||||||| ||||||| || ||||| || Sbjct 26766 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 26825 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 ||| ||| || ||| | | ||| ||||| ||||| | || || ||||||||| Sbjct 26826 GGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 26885 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 ||||| || ||||| | | | | | || | || || || ||| || |||||| || Sbjct 26886 AACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGC 26944 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || | |||||||| || || ||||| Sbjct 26945 AATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGG 26980 >seq309 Length=181836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| | Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | || || | || || || || || ||||| || | Sbjct 48115 CGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCCA 48057 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| ||||| || | || || | || || || || || || || || | Sbjct 48056 CAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCCGG 47997 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | ||| || || ||||| ||||| || ||||| || Sbjct 47996 CCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGG 47960 >seq7758 Length=1097 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | |||||||||||| || || | || |||||||| || || ||||| | || Sbjct 426 GTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCC 485 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | || ||||| || ||| |||||||| || || ||||| || Sbjct 486 GCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCA 545 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || | | ||||| || || || Sbjct 546 AGCAAAGGCCACGATCCGCTCCGCAAACGA 575 >seq853 Length=703183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | |||||||||||| || || | || |||||||| || || ||||| | || Sbjct 573562 GTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCC 573621 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | || ||||| || ||| |||||||| || || ||||| || Sbjct 573622 GCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCA 573681 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || | | ||||| || || || Sbjct 573682 AGCAAAGGCCACGATCCGCTCCGCAAACGA 573711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589905960935520