Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq96 257 2e-63 seq63 113 5e-20 >seq96 Length=556063 Score = 257 bits (284), Expect = 2e-63 Identities = 534/792 (67%), Gaps = 35/792 (4%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || |||||||| || |||| |||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||| | ||| || ||||| Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| |||| | || || ||| | || || |||||||| || Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || | ||||||||||| || ||| ||| | | || | |||| |||| || | Sbjct 7112 ACCGTCGCAGTTTCCACTCC-GGC----TAATAGTTTAGCACACTCTTTATTGTTACTAT 7166 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| ||| |||||||||| ||| |||||||| ||| | || ||| |||||| | Sbjct 7167 GGGGTCCTAAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTT 7226 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || ||||||| | || ||||| |||||||| ||| | | |||||||| | | Sbjct 7227 TTGTTGCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTG 7286 Query 170884 CAGGACTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 170941 | || | || || | ||||||| || ||| ||||||||||| | || | || Sbjct 7287 CTCGA--TCTATTCAATTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGT 7344 Query 170942 CTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 || | | || || || ||||| ||||||||| ||||||| || || || Sbjct 7345 TTTTGTTTATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAG 7404 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 || ||||| ||||| || ||||| | ||| | || | ||||| || || || || Sbjct 7405 TTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGAC 7464 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 |||||| |||||||| |||||||| ||||| || | | || | || | |||||||| Sbjct 7465 ATTGAACCCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGC 7524 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 ||||||||||| || | | || || || | ||||| || |||| Sbjct 7525 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAG------------ATGGTGAT-- 7570 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 | |||| ||||||||||| ||| | || || || | ||||||||||| Sbjct 7571 ---GGTGCAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 7623 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| | || | || | || ||||| || || ||| | ||||||| || || ||| | Sbjct 7624 AATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAATG 7683 Query 171302 ATTTTTACACTT 171313 | ||||| || Sbjct 7684 TTGGTTACATTT 7695 Score = 107 bits (118), Expect = 2e-18 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 171308 ACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 171367 ||| ||| ||||||| || || || || | | | |||||| || | || | || Sbjct 8873 ACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGT 8932 Query 171368 AGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGA 171427 ||||| || || ||||| | || || || || || ||||| || || | ||||| || Sbjct 8933 CGGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 8992 Query 171428 AGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 171487 ||| | || || |||||||||||||| || ||||| || | ||||||||||| | || Sbjct 8993 AGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGC 9052 Query 171488 ATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACC 171547 |||||| | | || || || ||||| ||| | || |||| || || || |||| Sbjct 9053 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACC 9112 Query 171548 AAGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 9113 CCGTGGAAACGCTCTTTAA 9131 >seq63 Length=438084 Score = 113 bits (124), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| || | || ||||||||| |||| ||||| ||||||||||||||| Sbjct 389298 GATATTGTTGTTGGCTCTGCACAGAGGTTTGGTGTTCCAATGGGTTATGGAGGTCCTCAT 389357 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || |||||| | || || | | |||| ||||| | ||| || || |||||| | | Sbjct 389358 GCAGCATTCCTGGCCACCTCCCAAGAGTACAAGAGGATGATGCCGGGAAGAATTATCGGT 389417 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || ||| | ||| || || | | || | ||||| || |||| Sbjct 389418 GTTAGT--GTTGATTCTTCAGGGAAGCCTGCGCTGCGTATGGCGATGCAGACAAGGGAGC 389475 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 | ||||||||||| ||||| || ||||| ||||| ||||| ||||||| Sbjct 389476 AACATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGG 389523 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 ||||| || || ||| ||| || | ||| || ||||| || ||||| || | || Sbjct 391757 CAGGTTGGTCTGACAAGTCCAGGTTGGATTGGAGCTGATGTTTGCCATCTCAATCTCCAC 391816 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||| || ||||||||||||||||| ||||||||| | |||||||| ||||| Sbjct 391817 AAAACATTTTGCATTCCACATGGAGGTGGTGGTCCTGGCATGGGTCCTATTGGTGT 391872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579139326856320