Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq96 237 2e-57 seq63 93.3 5e-14 >seq96 Length=556063 Score = 237 bits (262), Expect = 2e-57 Identities = 439/639 (69%), Gaps = 14/639 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || ||||| || || | || |||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||| | ||| || ||||| Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| |||| | ||| ||| ||| | ||||| ||||||||| Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || | ||||| ||||| || ||| ||| | | || | |||| |||| || | Sbjct 7112 ACCGTCGCAGTTTCCACTCC-GGC----TAATAGTTTAGCACACTCTTTATTGTTACTAT 7166 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| ||| |||||||||| || ||||||| ||| | || || ||||||| | Sbjct 7167 GGGGTCCTAAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTT 7226 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || ||||||| | || ||||| |||||||| ||| | ||||| ||||| | | Sbjct 7227 TTGTTGCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTG 7286 Query 173306 CAGGACTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 173363 | || | || || | ||||||| || ||| ||||||||||| | || | || Sbjct 7287 CTCGA--TCTATTCAATTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGT 7344 Query 173364 CTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 || | | || |||| || || ||||| ||| ||||||| || || || Sbjct 7345 TTTTGTTTATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAG 7404 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| ||||| || ||||| | ||| | || | ||||| || || || || Sbjct 7405 TTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGAC 7464 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 |||||| |||||||| |||||||| ||||| || | | || | || | ||||||| Sbjct 7465 ATTGAACCCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGC 7524 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 173582 ||||||||||| || | | || || || | |||||| Sbjct 7525 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGA 7563 Score = 120 bits (132), Expect = 4e-22 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 173730 ACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGT 173789 ||| ||| | ||||| || ||||| || | | | |||||| | | || | || Sbjct 8873 ACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGT 8932 Query 173790 AGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 173849 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| || Sbjct 8933 CGGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 8992 Query 173850 AGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGC 173909 ||||| || || |||||||||||||| || ||||| || | ||||||||||| | || Sbjct 8993 AGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGC 9052 Query 173910 ATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACC 173969 |||||| | || |||||| || ||||| ||| | || | || || || || |||| Sbjct 9053 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACC 9112 Query 173970 AAGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 9113 CCGTGGAAACGCTCTTTAA 9131 >seq63 Length=438084 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| ||||| ||| ||| || ||| || ||||| || ||||| || | || Sbjct 391757 CAGGTTGGTCTGACAAGTCCAGGTTGGATTGGAGCTGATGTTTGCCATCTCAATCTCCAC 391816 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| || ||||||||||||||||| ||||||||| | |||||||||||||| Sbjct 391817 AAAACATTTTGCATTCCACATGGAGGTGGTGGTCCTGGCATGGGTCCTATTGGTGT 391872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587976605705280