Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq96 389 5e-103 seq211 107 2e-18 >seq96 Length=556063 Score = 389 bits (430), Expect = 5e-103 Identities = 541/755 (72%), Gaps = 6/755 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || ||||| ||||| || |||||||| || | || || Sbjct 6944 GATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCTTT 7003 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| || || ||| | ||||| || ||| Sbjct 7004 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCATGG 7063 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 |||||||||| | | || ||||||| | ||||| ||||||| | || | || || Sbjct 7064 TATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAGTT 7123 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 || || || ||| | | | | || ||| | ||||||| ||||||||| | | ||| Sbjct 7124 TCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCACAA 7183 Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492 || |||||| || ||||| ||| | || || || |||| |||||| || || || || Sbjct 7184 GGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATGGC 7243 Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552 || || | || || ||||| ||| | || || |||||||||||||| | ||| | Sbjct 7244 GCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAATTG 7303 Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612 || ||||| ||||| || || |||||| ||| |||| ||||||||| ||||||||| Sbjct 7304 CGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTCCTA 7363 Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672 || ||||| || ||||||| | ||||| ||||| || ||||| || |||||||| || Sbjct 7364 ATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCTATA 7423 Query 183673 TTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 ||| ||| |||| || |||| ||||||| || || ||||| || ||||| || ||| Sbjct 7424 TTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCAT 7480 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 ||||||||||||||||| | | || | || || | ||||||| ||||||| || Sbjct 7481 ATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACT 7540 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 |||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 7541 ATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 7600 Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| ||||| || | ||||| || ||||| |||||||| Sbjct 7601 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTT 7660 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTT 183944 ||||||| ||| |||||| ||||||| || || Sbjct 7661 AGGGTTGCTTTTTCCAATAAATGTTGGTTACATTT 7695 Score = 131 bits (144), Expect = 2e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 183940 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATT 183999 || ||||||||||| ||||| || || | | | | ||| | | || |||| | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 || || || || || || ||||| ||||| || || ||| || ||| | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119 |||| ||||||||||| |||||||| || || || || | |||||||| | ||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCT 184179 ||| | || || ||||| || ||||| || ||||| | || |||||||| |||| Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 184180 AGAGGCAATGCTCTTTGATG 184199 | || || ||||||| ||| Sbjct 9114 CGTGGAAACGCTCTTTAATG 9133 >seq211 Length=154590 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 183561 CAATGCTA-TTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATC 183619 |||||| | |||| ||||| |||| |||||||||||||| ||||||||| || |||| Sbjct 29659 CAATGCGAATTGCATTCTCCGGTCTAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATC 29718 Query 183620 CACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT 183679 | || ||||||||| | ||||| || || || ||||| || |||||||| || ||| ||| Sbjct 29719 CGCTAGGTCAGTCTGCTTGGTTTTTGGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGAT 29778 Query 183680 T 183680 | Sbjct 29779 T 29779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611618406362400