Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq96 361 6e-95 >seq96 Length=556063 Score = 361 bits (400), Expect = 6e-95 Identities = 525/736 (71%), Gaps = 4/736 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || ||||| |||||||| ||||||||||| || |||| |||| ||| ||| | ||| Sbjct 6962 GACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCTTTCCTTGTGCCTATTTCGCT 7021 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| ||| || || || || || || |||||||| |||| | | ||| Sbjct 7022 TTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGAATTAGCA 7081 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| |||| || |||||| | || | |||||||| ||||| || || | Sbjct 7082 AGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAGTTTCCACTCCGGCTAATAGT 7141 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTG 166429 | | || ||| || | | || ||||||||| | || ||||| || ||| || | || Sbjct 7142 TTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCACAAGGAGACTTTACTC-GTTG 7200 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || || ||| | ||||||||||| || || ||||| | ||||| || Sbjct 7201 GTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATGGCGCTTTCGGACTAATAGG 7260 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548 ||| ||| | || || |||||| | ||||| |||| | | | || || || ||||||| Sbjct 7261 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAAT-TGCGACCTTATAATGCAA 7319 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 |||| || ||| ||| |||| ||| || ||| ||| || || || || || || |||| Sbjct 7320 TCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTCCTAATTTATCCGCTAGGTC 7379 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 | | |||||||||| || || ||| || || |||| || || |||||| |||| | Sbjct 7380 AGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCT 7439 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || || |||||| |||||||||||||||||||||| || || || Sbjct 7440 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTGGGG 7499 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | | || | ||| || | | ||| || ||||||| ||| |||| || ||| | | | Sbjct 7500 TGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACTATAGAAAATACTTTATTTG 7559 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| |||||||| ||| || || || | ||||||| |||||||| | Sbjct 7560 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 7619 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||||||||| || | || |||| |||||| || ||||| | |||| ||| |||| Sbjct 7620 ATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATA 7679 Query 166909 AGAGGTGGTTGCATTT 166924 | | ||||| ||||| Sbjct 7680 AATGTTGGTTACATTT 7695 Score = 172 bits (190), Expect = 6e-38 Identities = 193/258 (75%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 166920 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATT 166979 |||||||||||| | ||||| || || | | | |||||| ||| | | || | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 ||||| || || ||||| ||||| |||||||| ||||| || ||| | | ||||| || Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 |||| ||| ||||| || ||||| ||||| || |||||||| ||||| ||||| ||| || Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 167100 TGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCT 167159 |||||||| || ||||| |||||||| | | || ||||||| |||||||| || Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 167160 AGAGGTAACGCTCTCTAA 167177 | || |||||||| ||| Sbjct 9114 CGTGGAAACGCTCTTTAA 9131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563589299627520