Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2255 102 6e-17 seq176 93.3 3e-14 seq297 87.8 1e-12 seq736 84.2 2e-11 seq486 82.4 6e-11 >seq2255 Length=141741 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||| | ||| | | |||| |||| |||| Sbjct 139585 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGC 139644 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||| || || | || || |||| |||| |||||||||||| |||||| Sbjct 139645 TTACCCGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTA 139704 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || || ||||||||||| || ||||| || || || Sbjct 139705 GCTTTCACATTATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGTG 139764 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 139765 AGGGTCTTCACAAAGATCTGCATC 139788 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| |||||||| ||||| |||| || | | Sbjct 96260 AGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTT 96201 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || ||||| |||| | ||| || || | ||||| |||||| Sbjct 96200 CCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 96141 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || || || ||||| |||| ||| Sbjct 96140 TTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTA 96081 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| |||||| ||||| |||||||| Sbjct 96080 ATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | | || || | ||||||||||||||| Sbjct 96462 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 96403 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || || | |||| |||||||||||| |||||| || ||| Sbjct 96402 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 96343 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| ||| || || || || |||| ||| || || Sbjct 96342 ATCAATTGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCAC 96283 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 96282 AAAGATCTGCATC 96270 >seq176 Length=136227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || ||||| ||||| | || | ||| | || || | ||| Sbjct 88414 ATGGAGAGTGGACTCGTTCTGGATATTATAATCTGCAAGGGTACGACCATCCTCAAGCTG 88473 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||||||| |||| | ||| || |||| ||||| | ||||||||||| ||||| Sbjct 88474 TTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCTTGAATCT 88532 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||| ||| | | || || || ||| ||||||| ||||| || || || | Sbjct 88533 TAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTCCCAG 88592 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 88593 TCAGGGTCTTCACAAAAATCTGCAT 88617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || | || ||| ||||| || |||||||| | Sbjct 88847 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 88906 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | |||| || || ||||||||||| || || || | ||| ||||| | ||| Sbjct 88907 AGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 88966 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | | || || ||| ||| Sbjct 88967 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACC 89026 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || | ||||| || ||||||||||| Sbjct 89027 TCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| ||| || || |||||| || || |||||||| | ||| | | Sbjct 88628 AGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCCAGAGTCCTT 88687 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| ||||| | ||| ||||| | |||| || ||| Sbjct 88688 CCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCC 88747 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||| ||||||| || Sbjct 88748 TTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGACCTCCAAAGTT 88807 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | || || || ||||||||||| Sbjct 88808 ATCGTCTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 88845 >seq297 Length=529300 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||| | ||| |||| |||| || | |||||| ||||| || Sbjct 439836 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 439777 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| || || | ||||| |||||||||||| ||||| || ||| Sbjct 439776 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 439717 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | ||||| || || ||||| | ||||| || Sbjct 439716 TCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 439657 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 439656 AAGATCTGCAT 439646 >seq736 Length=481145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| | || || || ||| || ||||||||||| |||| Sbjct 406022 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGCC 406081 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGG 48658 | | | || |||| |||| |||||| || ||||| |||| | ||| || || ||||| Sbjct 406082 AAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTGGG 406141 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| ||||| || ||| | | | || || ||| || Sbjct 406142 ATC-CCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGCTCTCGAC 406200 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| |||| || || || || |||||||| Sbjct 406201 CTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 406248 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || ||||| |||| || | || Sbjct 406259 AGACGAAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGG 406318 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| |||| | || || |||| || | |||||| Sbjct 406319 CCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGGATACCCTCC 406378 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| || Sbjct 406379 TTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTG 406438 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || |||||||||||||| Sbjct 406439 ATGGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 406476 >seq486 Length=243247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| || | || | ||| | || || || || ||||| ||||| | Sbjct 19562 CCACCCCTTAGTCGAAGAACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCTGCC 19621 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 | | | | | || || | |||||| || ||||| || || | ||||| || | |||| Sbjct 19622 AAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTGGG 19681 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | || |||||||| ||||||| || ||| | | | ||||| ||||||| Sbjct 19682 ATC-CCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATGGTATCTGAACCCTCCAC 19740 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || ||||| |||||||| || ||||| || |||||| Sbjct 19741 CTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAATATTTGCATC 19789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380890486113804