Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq96 320 2e-82 >seq96 Length=556063 Score = 320 bits (354), Expect = 2e-82 Identities = 529/758 (70%), Gaps = 4/758 (1%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || ||||||||||| || |||||||| || | || || Sbjct 6944 GATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCTTT 7003 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| || || ||| | ||||| || ||| Sbjct 7004 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCATGG 7063 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || ||||||| | || ||||||| | ||||| ||||||| | || | || || Sbjct 7064 TATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAGTT 7123 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC-A 164857 || || || ||| || | | | || ||| | | |||| ||||||||| | | | | Sbjct 7124 TCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCACAA 7183 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || || ||| | || ||||| ||| | || || ||||||| ||| || ||||| || || Sbjct 7184 GGAGACTTTAC-TCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATGG 7242 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 || |||| ||||| ||||| ||| | || || ||||| || || || ||| ||| Sbjct 7243 CGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-ATTCAAT 7301 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | || ||||| ||||| || || |||||| ||| |||| ||||||||| || |||| Sbjct 7302 TGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTCC 7361 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || || || || ||||||| |||||||||| || || ||||| || ||||| | Sbjct 7362 TAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCTA 7421 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | || | ||||| || || || ||||| | ||||| || |||| Sbjct 7422 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 7481 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| ||||| || | ||||| | || || ||| |||||||||||| | || Sbjct 7482 TGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACTA 7541 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | |||||||| |||| || ||||| || |||||||| || || ||| | | | Sbjct 7542 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 7601 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | ||||| |||||||| |||||||| | || ||||| ||||| || ||||| Sbjct 7602 CTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTTA 7661 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTC 165374 | |||| ||||| || || | ||| | |||||| || Sbjct 7662 GGGTTGCTTTTTCCAATAAATGTTGGTTACATTTTGTC 7699 Score = 156 bits (172), Expect = 5e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 165366 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATT 165425 ||||| || ||||| ||||| || || | | | | |||| || |||| | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 165426 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 165485 ||||| || || ||||| ||||| || || ||||| |||||| ||| | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 165486 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCT 165545 |||| ||||||||||| |||||||||||||| || || || |||||||| | |||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 165546 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCT 165605 ||| |||| || ||||| || ||||||||| |||| |||| || || || | || Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 165606 AGAGGCAACGCCCTTTAAT 165624 | || ||||| ||||||| Sbjct 9114 CGTGGAAACGCTCTTTAAT 9132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563138156862240