Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq486 107 2e-18 seq2255 86.0 5e-12 seq1231 84.2 2e-11 >seq486 Length=243247 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || ||| || ||||| ||||| ||||| || || || |||||| Sbjct 19923 GACAAAGAGGGAATTCCACCAGACCAGCAGAGGCTTATATTTGCTGGAAAGCAGTTGGAA 19864 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| || ||| |||| |||||||||||||| || ||||||||| ||||| | || | Sbjct 19863 GATGGTAGGACTTTGGCTGATTATAACATTCAGAAGGAATCTACTTTGCACCTTGTTCTT 19804 Query 28767 AGATTACGAGGAGGGAT 28783 |||| || || ||||| Sbjct 19803 CGATTGCGGGGTGGGAT 19787 >seq2255 Length=141741 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || || ||||||||||| ||| |||| || Sbjct 96043 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 96102 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| ||||| | ||| ||| || Sbjct 96103 GATACTATTGATAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 96162 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| ||||| || | || || | || | || || || ||| Sbjct 96163 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGACGGAAGGACCCTTGCTGACTACAAC 96222 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||||||||| |||| | || | || || ||||| Sbjct 96223 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGACTGCGTGGTGGGAT 96272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || || || ||||| ||| |||| || Sbjct 140015 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCT 139956 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| ||||| ||||| | || ||| || Sbjct 139955 GATACTATTGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 139896 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||| || |||| ||| | || | ||||| || ||| Sbjct 139895 CAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAAC 139836 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || || |||||| |||| Sbjct 139835 ATTCAAAAGGAGTCGACCCTGCACTTGGT 139807 >seq1231 Length=361431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || ||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 154468 GACCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACTCTTGCAGAT 154409 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||||||||| || || || || ||| |||| || || Sbjct 154408 TATAACATTCAAAAGGAGTCAACACTTCACTTGGTTTTGAG 154368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425352186466092