Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq96 250 3e-61 seq63 96.9 4e-15 >seq96 Length=556063 Score = 250 bits (276), Expect = 3e-61 Identities = 437/634 (69%), Gaps = 4/634 (1%) Strand=Plus/Minus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | | || ||||||||||| ||||||| | || | || Sbjct 7563 TCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGCACATAACAGAGCAGCGCCC 7504 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | | || ||||| |||||||| |||||||| |||||||| || || || ||||| Sbjct 7503 AACACCCCAGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 7444 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | ||| | ||||| || ||||| ||||| || || || || ||||||| Sbjct 7443 AAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAACTGGGCGCAAAAAACCAACCA 7384 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 ||||||||| ||||| || || || | | || || | || | ||||||| Sbjct 7383 AACTGACCTAGCGGATAAATTAGGAATACATAAACAAAAACAACAATTCGACTAGAGAAT 7324 Query 123512 GCGAGTGCGTTGTAAGGTCTAA--TGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCA 123569 |||| ||| || ||||||| | || || | || || | |||||||| | | || Sbjct 7323 GCGATTGCATTATAAGGTCGCAATTGAATAGA--TCGAGCAAGTTCAAATTGACGTAACA 7266 Query 123570 TGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTT 123629 | |||||||| ||||| || | ||||||| || ||||| |||||||||| || | || Sbjct 7265 TAAAACCTATTAGTCCGAAAGCGCCATGTAGAGCAACAAAAGTCCATAGACCGCCTAATT 7206 Query 123630 GTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGAC 123689 | |||||||| || ||||||||||| ||| ||||| || |||| | | || Sbjct 7205 GACACCAACGAGTAAAGTCTCCTTGTGCTTTAGGACCCCATAGTAACAATAAAGAGTGTG 7146 Query 123690 CCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATG 123749 | | | | | || ||||| ||||| | ||||| ||||| || || | ||| | Sbjct 7145 CTAAACTATTAGCCGGAGTGGAAACTGCGACGGTTAAAAAGTTACAGCCTTCCAAATAGG 7086 Query 123750 AAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCAC 123809 || ||| | |||| ||||||||||| || || ||||| || ||| | ||||||| | Sbjct 7085 AACTTGCTAATTCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGTGGACCAACCCC 7026 Query 123810 CGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAAC 123869 | | | | ||| |||||||| | || || || |||||||| |||| || ||||||| Sbjct 7025 CTAAAGCGAAATAGGCACAAGGAAAGAGAAATAGGCCAGACCAACCTACAAAAACAAAAC 6966 Query 123870 GATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 | || ||| ||||||||| || | || |||||| Sbjct 6965 GGTCCCTCCGTAACCAGTCATCCATAATATCAAA 6932 Score = 107 bits (118), Expect = 2e-18 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || |||| || || || ||||| || || Sbjct 9131 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGATTATAAGGTTTTCATGAGGCTG 9072 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || |||||||| | ||||| || || || ||||| Sbjct 9071 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAA 9012 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || | ||||| ||||| | || || ||||| || ||||| || || | Sbjct 9011 AGTCTCAAATTCAAGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACG 8952 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || ||||| || | || | || |||||| | | | || || || Sbjct 8951 TAGGTTCAGCGCCAGACCGACTACTCCAAGAGCACTCATCCACAAAACGGTTACTGGTAC 8892 Query 123106 GAACAACATAAGGAAGTGT 123124 || ||||||| ||| ||| Sbjct 8891 AAATAACATAAAGAAATGT 8873 >seq63 Length=438084 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| || || ||||| ||||| || || || Sbjct 389521 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTCCTGATATGTTGCTCCCTTGTCTGC 389462 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | ||||| || ||| || |||| || ||| | |||||| | Sbjct 389461 ATCGCCATACGCAGCGCAGGCTTCCCTGAAGAATCAACACTAAC--ACCGATAATTCTTC 389404 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | ||||| |||| | | || || | |||||| |||||||||||||| | Sbjct 389403 CCGGCATCATCCTCTTGTACTCTTGGGAGGTGGCCAGGAATGCTGCATGAGGACCTCCAT 389344 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | ||||| |||| ||||||||| || | || ||| ||||||| Sbjct 389343 AACCCATTGGAACACCAAACCTCTGTGCAGAGCCAACAACAATATC 389298 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| ||||||||||||||||| || ||||| || || Sbjct 391872 ACACCAATAGGACCCATGCCAGGACCACCACCTCCATGTGGAATGCAAAATGTTTTGTGG 391813 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || ||||| || ||| || ||| ||| ||||| ||||| Sbjct 391812 AGATTGAGATGGCAAACATCAGCTCCAATCCAACCTGGACTTGTCAGACCAACCTG 391757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578924954052960