Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq96 381 8e-101 seq211 91.5 2e-13 seq59 86.0 8e-12 >seq96 Length=556063 Score = 381 bits (422), Expect = 8e-101 Identities = 545/765 (71%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 23640 AAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTT 23699 || || ||||||| |||||| ||| ||||||| |||||||| |||||||| ||||| Sbjct 7695 AAATGTAACCAACATTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGCGATTA 7636 Query 23700 GCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTT 23759 | || ||||| ||||| || || || | ||||| | | || || || || ||| Sbjct 7635 GTGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTATTT 7576 Query 23760 GCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGA 23819 || || ||||||||| | | ||||| || | |||| | |||||||||||| | | Sbjct 7575 GCACCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGCACATAAC 7516 Query 23820 AGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTA 23879 || || | |||| | |||||||||||||||||||| || ||||| | ||||| ||| Sbjct 7515 AGAGCAGCGCCCAACACCCCAGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTA 7456 Query 23880 TGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCA 23939 ||||| || |||| ||||| | ||| | || || || || ||||| ||||| |||||| Sbjct 7455 TGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAACTGGGCGCA 7396 Query 23940 AAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATA 23999 || |||||| |||| || | ||||| || ||||||||| | || || ||| |||| Sbjct 7395 AAAAACCAACCAAACTGACCTAGCGGATAAATTAGGAATACATAAACAAAAACAACAATT 7336 Query 24000 GGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAA 24058 ||| ||| || || || ||||| || || || | | ||| ||| || || |||||||| Sbjct 7335 CGACTAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAT-AGATCGAGCAAGTTCAAA 7277 Query 24059 CTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAG 24118 |||||||||||||||||||| ||| | || || || || ||||||||||| | ||| || Sbjct 7276 TTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCATGTAGAGCAACAAAAGTCCATAG 7217 Query 24119 CCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAG 24178 || || | ||| ||| || |||||| ||||| | | ||||||||| |||| | Sbjct 7216 ACCGCCTAATTGACACCAACGAGTAAAGTCTCCTTGTGCTTTAGGACCCCATAGTAACAA 7157 Query 24179 AAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACC 24238 | ||| || | | | | ||| || || || || || | || | ||||||| || Sbjct 7156 TAAAGAGTGTGCTAAACTATTAGCCGGAGTGGAAACTGCGACGGTTAAAAAGTTACAGCC 7097 Query 24239 CTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGT 24298 || | ||||||||| || | | ||||||| ||||| || ||||| | ||| || || Sbjct 7096 TTCCAAATAGGAACTTGCTAATTCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGT 7037 Query 24299 AAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCAC 24358 |||||| || | || | ||| ||| |||| || | || ||||||||||| || Sbjct 7036 GGACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGAAATAGGCCAGACCAACCTAC 6977 Query 24359 AAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||| ||||| || |||| | |||||| |||| || ||||| Sbjct 6976 AAAAACAAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 6932 Score = 86.0 bits (94), Expect = 8e-12 Identities = 177/262 (68%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | || || | |||||| |||| | | |||||| || | Sbjct 9132 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGATTATAAG---GTTTTCATGAG 9076 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || | |||||| |||| | || | || || | ||||||||| |||| Sbjct 9075 GCTGATCTTGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGT 9016 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || ||| || || ||||| | Sbjct 9015 AGAAAGTCTCAAATTCAAGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGG 8956 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || || || || || | | |||| || | | ||| | | | | || | Sbjct 8955 CACGTAGGTTCAGCGCCAGACCGACTACTCCAAGAGCACTCATCCACAAAACGGTTACTG 8896 Query 23623 GAACAAACAACATAAAGAAGTG 23644 | ||||| ||||||||||| || Sbjct 8895 GTACAAATAACATAAAGAAATG 8874 >seq211 Length=154590 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 23910 AAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAG 23969 || || || || ||||| ||||| ||||| || ||||||| ||||| || | ||||| Sbjct 29773 AATATAGCTGCTACACCAAAACTGGGCGCCAAAAACCAAGCAGACTGACCTAGCGGATAA 29714 Query 23970 ATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAA-TCGCATTG 24023 || ||||||||||| || || |||||||| |||| || || |||| |||||||| Sbjct 29713 ATTAGGAATACAGAAACAAAAACAGCAATTAGACCGGAGAATGCAATTCGCATTG 29659 >seq59 Length=608880 Score = 86.0 bits (94), Expect = 8e-12 Identities = 181/269 (67%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| | || ||| ||| || |||| ||| ||||| | Sbjct 602275 ATCAATGCCGGCAAAACATGGGAATTCTCGGGGTGAAAGTTGTCATGTGGCCCATACAAA 602334 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || |||||| || || |||| | ||||| |||| ||||| |||||| Sbjct 602335 TTGGTGGGCATCCCCGAAATCGCATCCCAATTGTACTGAATCCGGTAAGCCTGGCACATC 602394 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 ||||| || || ||||| ||||| ||||| | ||||| | || || ||||| || | Sbjct 602395 TTGATCCCGGCGATCTTGGCAATCGCATACCACTCATTTGTGGGCTCCAGAGGGCC---C 602451 Query 47160 ATTAGATATTC---TTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAA 47216 ||| || | ||| ||||| ||| | || || || ||||| || || || Sbjct 602452 GTTAACAATGCGCTTTCGGGGATAGGCTGTGGAGCGAACTTGGGGTAAATACAAGAGGAG 602511 Query 47217 CCAAGAAATAAAAGTTTCTTAACACCAAA 47245 || ||||| || || ||||| || || || Sbjct 602512 CCGAGAAACAAGAGCTTCTTCACTCCGAA 602540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665409982035360