Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2548 109 7e-19 seq309 105 8e-18 seq174 98.7 1e-15 seq7758 82.4 9e-11 seq853 82.4 9e-11 >seq2548 Length=43478 Score = 109 bits (120), Expect = 7e-19 Identities = 303/462 (66%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || ||| ||| | ||||| || | || Sbjct 27104 TGATGTTGCTGGGGTAGATGAAGCCAAGCAGGATTTTGTGGAGGTCGTGGAATTCTTGAA 27045 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | |||||||| | || ||| || || || ||| | ||||| | || Sbjct 27044 GAAGCCCGAGAGGTTCACTGCTGTTGGGGCTCGAATTCCTAAAGGGGTTCTTCTTGTTGG 26985 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || |||||||| || | || || || || |||||| | ||| || Sbjct 26984 TCCTCCAGGAACTGGAAAGACTCTGTTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCC 26925 Query 175371 ATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 ||| || ||| | | | ||||| || |||||||||||||| ||||| | Sbjct 26924 ATTTTTCTCCATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCG 26865 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 ||||| ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| Sbjct 26864 AGTTCGTGATCTTTTTAAGAAGGCCAAAGAGAATGCACCTTGCATTGTATTTGTTGATGA 26805 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAG 175547 |||||||| || || |||| | | |||| |||| || |||||| || || Sbjct 26804 AATTGATGCTGTTGGACGGCAAAGAGGAACTGGAATTGGT---GGAGGAAATGATGAAAG 26748 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG--- 175604 ||||||||| ||||||| || | || || |||||||| ||||| | ||||| Sbjct 26747 AGAACAAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGCAACACTGGTAT 26688 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||||||| |||| || ||||| | | || || ||||| Sbjct 26687 CATTGTGG---TTGCAGCGACTAACAGGGCAGACATTCTTGA 26649 >seq309 Length=181836 Score = 105 bits (116), Expect = 8e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||| ||||| ||||| |||| ||| | | |||| || ||||| || |||||||| Sbjct 47920 TGGAGCCAAAATCCCAAAAGGCTGTCTTTTGGTGGGTCCACCTGGTACCGGCAAGACCCT 47979 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394 || || || ||| | || || || | || || || || ||| | || || | Sbjct 47980 TCTGGCTCGGGCCGTGGCCGGCGAGGCTGGGGTGCCGTTTTTCTCTTGCGCAGCTTCAGA 48039 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || ||||| ||||||| || |||||||| || || || || | || || | || Sbjct 48040 GTTCGTGGAATTGTTTGTGGGAGTGGGTGCGTCGAGAGTGCGGGACTTGTTCGAGAAGGC 48099 Query 175455 CC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | | ||| | || || ||||| |||||||||||||||||||||||||| | ||| Sbjct 48100 CAAGTCGAAAGCG-CCGTGCATTGTGTTCATTGATGAGATTGATGCGGTGGGGAGGCAGA 48158 Query 175514 GCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | | || ||| | | ||||| ||||| || || || |||||||| || | | Sbjct 48159 GAGGAGCAGGTATGGGGGGTGGGAATGATGAGAGGGAGCAGACCATTAATCAGCTGTTGA 48218 Query 175574 CCGAGATGGATGGCTTT 175590 | ||||||||||||||| Sbjct 48219 CGGAGATGGATGGCTTT 48235 >seq174 Length=291255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| ||||||| | ||| |||||||| ||||| |||| || |||||| ||||||| Sbjct 139220 AGGATTCTTGTAATAGGAAAAGTAACCAGCAGAATCTGGGTACCATCAAGTCTTCAAATC 139161 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 ||||||| |||||| | |||| |||| | || || || ||||| |||||||||| Sbjct 139160 TTTGCACTGAAATTATTGAGTTCACAAGTCCAACAGAAACTGCAGTTTGTAATTTGGCAT 139101 Query 76053 CAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 | || || | || |||||||| ||| || Sbjct 139100 CCATTGCATTACCCCGATATGTCAAGGAAAAG 139069 >seq7758 Length=1097 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || ||||| | | || ||||| || ||||| || || |||||||| ||| Sbjct 575 TCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGT 516 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| || | |||| | |||||||| || | ||||| || || |||||||| Sbjct 515 TTTTGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAAC 456 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || | || || |||||||||||| | ||| Sbjct 455 GAGTTGATCTCGCGAGATGAGGGTTTGCAC 426 >seq853 Length=703183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || ||||| | | || ||||| || ||||| || || |||||||| ||| Sbjct 573711 TCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGT 573652 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| || | |||| | |||||||| || | ||||| || || |||||||| Sbjct 573651 TTTTGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAAC 573592 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || | || || |||||||||||| | ||| Sbjct 573591 GAGTTGATCTCGCGAGATGAGGGTTTGCAC 573562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596493925146240