Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq96 342 6e-89 >seq96 Length=556063 Score = 342 bits (378), Expect = 6e-89 Identities = 529/753 (70%), Gaps = 2/753 (0%) Strand=Plus/Minus Query 66840 AAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTT 66899 ||||| ||||| | |||||| ||| |||| | |||||| || ||||| ||||| || Sbjct 7695 AAATGTAACCAACATTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGCGATTA 7636 Query 66900 GCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTT 66959 | || |||||||| ||||||||||| ||||||| | || || || ||| || ||| Sbjct 7635 GTGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTATTT 7576 Query 66960 GCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGC 67019 || |||||||||||| | | |||||| |||| ||| |||||||||| ||| | | | Sbjct 7575 GCACCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGCACATAAC 7516 Query 67020 AATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTA 67079 | ||| | |||| | || || || |||||||||||||| |||||||| ||||| ||| Sbjct 7515 AGAGCAGCGCCCAACACCCCAGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTA 7456 Query 67080 TGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCG 67139 || || ||||| | ||||| | ||||||||| || |||| || || ||| || || Sbjct 7455 TGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAACTGGGCGCA 7396 Query 67140 AAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATA 67199 |||||||||| | ||||| || || || || || || ||| |||||||||| | || Sbjct 7395 AAAAACCAACCAAACTGACCTAGCGGATAAATTAGGAATACATAAACAAAAACAACAATT 7336 Query 67200 GGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAA 67258 ||| |||||| || || ||||| || || || | | || ||| || || |||||||| Sbjct 7335 CGACTAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAATAGATCGAGCAAGTTCAAA 7277 Query 67259 CTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAG 67318 || || | ||| ||||| ||||| ||||||| || || || || |||||| |||| || Sbjct 7276 TTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCATGTAGAGCAACAAAAGTCCATAG 7217 Query 67319 TCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAG 67378 || || | ||| ||| || || || || || | | ||||||||| |||| | Sbjct 7216 ACCGCCTAATTGACACCAACGAGTAAAGTCTCCTTGTGCTTTAGGACCCCATAGTAACAA 7157 Query 67379 AAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCACC 67438 | ||| || | | | || ||| || || || || || | || | ||| ||| || Sbjct 7156 TAAAGAGTGTGCTAAACTATTAGCCGGAGTGGAAACTGCGACGGTTAAAAAGTTACAGCC 7097 Query 67439 CTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGT 67498 || | ||| | || | | | || || ||||| || ||||| || ||||| || Sbjct 7096 TTCCAAATAGGAACTTGCTAATTCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGT 7037 Query 67499 AAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCAC 67558 ||| || || | || | ||| ||| ||||| |||| ||| ||||||||||| || Sbjct 7036 GGACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGAAATAGGCCAGACCAACCTAC 6977 Query 67559 AAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||| ||||| || || | | ||||||||| Sbjct 6976 AAAAACAAAACGGTCCCTCCGTAACCAGTCATC 6944 Score = 179 bits (198), Expect = 4e-40 Identities = 195/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || |||| || || ||||||||| || | Sbjct 9132 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGATTATAAGGTTTTCATGAGGCT 9073 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| ||||||||| || ||||| || || ||||||| Sbjct 9072 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGA 9013 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || | ||||| ||||| | ||| || || || || |||||||| |||| Sbjct 9012 AAGTCTCAAATTCAAGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCAC 8953 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || ||||| | | || | | ||| |||| | | | | || || | Sbjct 8952 GTAGGTTCAGCGCCAGACCGACTACTCCAAGAGCACTCATCCACAAAACGGTTACTGGTA 8893 Query 66826 CAAACAACATAAAGAAATG 66844 |||| |||||||||||||| Sbjct 8892 CAAATAACATAAAGAAATG 8874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571981834899360