Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq486 122 2e-22 seq176 122 2e-22 >seq486 Length=243247 Score = 122 bits (134), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| ||| || || || |||||||| || | || || || ||||| || Sbjct 19328 ATACCACCTCGCAAACGGAGAACAAGATGCAAGGTGGATTCCTTCTGGATGTTATAATCA 19387 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| ||| |||| || ||||| |||||||| | ||||| || |||||| Sbjct 19388 GCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCAGGA 19447 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | || | ||| || ||||| ||| ||| Sbjct 19448 GGGATTCCTTCTTTATCTTGAATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCC 19507 Query 193311 ACTTCTAGAG---TTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||| | ||||| || || || | || || ||||||| |||||| Sbjct 19508 ACCTCCAGAGTGATGATAGTCTTTCCAGTCAAAGTCTTGACAAATACTTGCAT 19560 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | |||||| || |||||||| |||| || || |||||||| || Sbjct 19559 ATCCCACCCCTTAGTCGAAGAACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCT 19618 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || ||||| |||||||| | || ||||| ||||| Sbjct 19619 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 19678 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| || ||||| ||| ||| Sbjct 19679 GGGATCCCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATGGTATCTGAACCCTCC 19738 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || | || || |||||||||||||| Sbjct 19739 ACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAATATTTGCAT 19788 >seq176 Length=136227 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||||||| || | ||||| || | || || || || |||||| Sbjct 89072 ATACCACCTCTCAATCGAAGAACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCG 89131 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| || || ||||| ||||| || ||||| || ||||| || || || Sbjct 89132 GCGAGGGTTCGGCCGTCCTCCAATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGG 89191 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || |||| || | || || ||||| || ||| Sbjct 89192 GGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCG 89251 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| || || || ||||| ||||| || || |||||||| Sbjct 89252 ACTTCTAGGGTTATTGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 89301 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||||||||| || |||| ||||| || | || || ||||| Sbjct 89294 ATTTGCATACCGCCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTG 89353 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | || || ||||| || ||||| || || || ||||| || Sbjct 89354 TAGTCGGCAAGGGTGCGGCCGTCCTCCAATTGCTTGCCGGCGAAGATCAACCTCTGCTGG 89413 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| ||||||| |||| || || ||||| || Sbjct 89414 TCTGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTTACGTTGTCGATCGTATCAGAG 89473 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 89474 CTCTCGACTTCTAAGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 89529 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||| ||||| || | ||| || || || || || Sbjct 88844 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 88903 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| || |||||||| || ||||| || || | ||||| ||||| || Sbjct 88904 GCAAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 88963 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || |||| || | || ||| |||||||| ||| Sbjct 88964 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCG 89023 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 89024 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899540278839360