Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq176 105 1e-17 seq486 100 6e-16 seq2255 98.7 2e-15 seq1231 87.8 4e-12 >seq176 Length=136227 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | ||| | ||| | ||| || |||||||||||| | Sbjct 88390 ACCACCACGCAGACGAAGGACAAGATGGAGAGTGGACTCGTTCTGGATATTATAATCTGC 88449 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||||| || |||||||| || ||||| || || ||||| Sbjct 88450 AAGGGTACGACCATCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 88509 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || ||| ||| ||||| |||| || || || || Sbjct 88510 GATCCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 88569 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || ||||| | || || | ||| |||||||| Sbjct 88570 CTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 88617 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || || || ||||| | ||| || ||| || ||||| Sbjct 88844 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 88903 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | || || ||||| ||||| || ||||| | ||||| ||||| || Sbjct 88904 GCAAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 88963 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || ||| || | ||| || || Sbjct 88964 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCG 89023 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || |||| ||||| | || |||||||| Sbjct 89024 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq486 Length=243247 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || | ||| ||||||| || || |||||||||||| Sbjct 19559 ATCCCACCCCTTAGTCGAAGAACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCT 19618 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | |||| || | || || || ||||| || | || ||||| |||||| Sbjct 19619 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 19678 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| ||| | |||||| || Sbjct 19679 GGGATCCCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATGGTATCTGAACCCTCC 19738 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || ||||| || || || | |||||| ||||| Sbjct 19739 ACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAATATTTGCAT 19788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| | || | ||| || || | || || ||| ||||||||| Sbjct 19328 ATACCACCTCGCAAACGGAGAACAAGATGCAAGGTGGATTCCTTCTGGATGTTATAATCA 19387 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || |||||||| || | ||||| || ||||| Sbjct 19388 GCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCAGGA 19447 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || || || ||||| ||| | ||| || || Sbjct 19448 GGGATTCCTTCTTTATCTTGAATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCC 19507 Query 192487 ACTTCTAGAGTAATG---GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||| || || ||||| || || || | ||||| ||||| Sbjct 19508 ACCTCCAGAGTGATGATAGTCTTTCCAGTCAAAGTCTTGACAAATACTTGCAT 19560 >seq2255 Length=141741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | || || | || || || | ||| | ||| ||| || || || || || Sbjct 96272 ATCCCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 96214 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || | | | || || | || || || |||||||| || ||||| || || || Sbjct 96213 AGCAAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGG 96154 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| |||| ||| || ||| Sbjct 96153 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTC 96094 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| ||||| | ||||| | |||||||||||| Sbjct 96093 CACTTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | ||||| || | || | || ||| || ||||| ||||| Sbjct 140242 ATACCCCCACGAAGACGAAGCACTAAGTGAAGGGTTGATTCCTTTTGA-ATATTGTAATC 140300 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | || || ||||||||||| | ||||| || || || Sbjct 140301 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGG 140360 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || ||||| ||||| || ||| || |||||| || | || || || Sbjct 140361 TGGGATGCCCTCTTTGTCTTGGATCTTAGCCTTGACATTATCAATCGTGTCGGAGCTCTC 140420 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| || || || | || |||| |||||| |||||| Sbjct 140421 AACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACAAATATTTGCATT 140472 >seq1231 Length=361431 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || |||||||| | | ||||| |||| |||||||| ||||||||||| | Sbjct 154394 CTTTTGA-ATGTTATAATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAA 154452 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | ||||||||||| ||||| || || ||||| ||||| || Sbjct 154453 TCAATCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTG 154492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984351996679800