Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq486 109 1e-18 seq2255 104 4e-17 seq1231 100 5e-16 seq176 95.1 2e-14 seq113 89.7 9e-13 >seq486 Length=243247 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || ||||| | || | ||| ||||||| || || |||||||||||| Sbjct 19559 ATCCCACCCCTTAGTCGAAGAACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCT 19618 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || || |||||||| | || |||||||||||| Sbjct 19619 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 19678 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| ||| |||||||| || Sbjct 19679 GGGATCCCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATGGTATCTGAACCCTCC 19738 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| || || || | ||||| ||||| Sbjct 19739 ACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAATATTTGCAT 19788 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | |||| || | |||| |||||| || |||||||| | Sbjct 17880 ACCCCCACGAAGACGAAGCACTAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGC 17939 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| |||| || | ||| || ||||||||||| | ||||| || || || || Sbjct 17940 CAGGGTACGTCCGTCCTCAAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGG 17999 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 | || ||||| ||||| |||||| ||| ||||| || ||||| || || || Sbjct 18000 GAAACCCTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATTGTATCAGAACCATCAAC 18059 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| || || || ||||| | ||||| | || ||||||||| Sbjct 18060 ATCAAGAGTGATTGTCTTCCCAGTCAGAGTTTTGACAAAAATCTGCATT 18108 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || |||||||| | || |||||||||||||| || ||||| || ||||| || Sbjct 19184 TGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATC 19243 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| ||| ||||| || || || || ||||| ||||| || || Sbjct 19244 TTTGCCTTCACATTGTCTATGGTATCAGAGCTCTCCACATCAAGAGTGATGGTCTTGCCC 19303 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||| || |||||||| Sbjct 19304 GTCAAGGTCTTAACAAAGATCTGCAT 19329 >seq2255 Length=141741 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || || || | ||| | ||| || ||| || || || Sbjct 96272 ATCCCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCA 96213 Query 171900 GATAAAGATCGTTC-GTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| ||| || | || || || ||||| || || ||||| ||||| || Sbjct 96212 GC-AAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGG 96154 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || || || || ||||| || |||||| |||||||| || ||| Sbjct 96153 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTC 96094 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| ||||| | ||||| | ||||||||||| Sbjct 96093 CACTTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 >seq1231 Length=361431 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || || | || || || || | || | ||| || ||| |||| Sbjct 154348 TCATAGTTCCTCCCCTCAGCCTCAAAACCAAGTGAAGTGTTGACTCCTTTTGAATGTTAT 154407 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || ||| | || |||||||| |||||||||||||| ||||||||||||| Sbjct 154408 AATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGGT 154467 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 154468 CAGGAGGGATGCCTTCCTTATCCTG 154492 >seq176 Length=136227 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | ||||| || ||||| | || || || || || || Sbjct 89072 ATACCACCTCTCAATCGAAGAACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCG 89131 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| |||||||| || || || ||||| || ||||| ||||| || Sbjct 89132 GCGAGGGTTCGGCCGTCCTCCAATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGG 89191 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || || || || || ||||| || || Sbjct 89192 GGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCG 89251 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 89252 ACTTCTAGGGTTATTGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 89301 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||| | ||| || ||||||||||||| Sbjct 88390 ACCACCACGCAGACGAAGGACAAGATGGAGAGTGGACTCGTTCTGGATATTATAATCTGC 88449 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||| || ||||| || || ||||| ||||| ||||| Sbjct 88450 AAGGGTACGACCATCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 88509 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || ||| ||| ||||| ||||| || || || || Sbjct 88510 GATCCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 88569 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || ||||| | || || | || |||||||| Sbjct 88570 CTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 88617 Score = 89.7 bits (98), Expect = 9e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || ||||| | ||| || || || ||||| Sbjct 88844 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 88903 Query 171900 GATAAAGATCGT-TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | |||| || ||||| ||||| || || || | ||||| || || || Sbjct 88904 G-CAAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGG 88962 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || || ||||| || || || || ||| || ||||| || || Sbjct 88963 GGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTC 89022 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| || |||| ||||| | ||| |||||||| Sbjct 89023 GACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq113 Length=202937 Score = 89.7 bits (98), Expect = 9e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | || ||| | || |||||||| |||||||||||||| |||||| Sbjct 28832 ATGTTATAATCTGCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTC 28891 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 || |||||||| || || ||||| ||||| || Sbjct 28892 TGCTGGTCAGGAGGGATGCCTTCCTTATCCTG 28923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905021183498400