Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq399 132 1e-25 seq2548 125 2e-23 seq1004 109 2e-18 seq659 105 2e-17 seq174 100 8e-16 >seq399 Length=370696 Score = 132 bits (146), Expect = 1e-25 Identities = 285/420 (68%), Gaps = 16/420 (4%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| |||||||| || || ||||||||| | Sbjct 346224 TAAACCCATCCATTTCAGTAAGCAACTGATTGAGTGTTTGCTCTCTCTCATCATTT---C 346168 Query 288998 CTCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 | | |||| | || | |||| | | | || |||||||| || || |||||| Sbjct 346167 CCC------CACCA-ATTCCTGTTCCTCTCTGCCTCCCTACAGCATCTATCTCATCAATG 346115 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || || || ||||| | | || | ||||| || || || | || ||| Sbjct 346114 AAAACCAAGCATGGGGAATTGGCTTTAGCCTTGTTGAATAAATCCCTCACTCTAGAAGCT 346055 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | || ||| |||| |||| || || || | || | || ||| | || | Sbjct 346054 CCTACTCCTACAAACATCTCTATGAACTCTGACCCTGACAAAGAAAAGAAAGGGACCCCT 345995 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| ||||||| ||| | ||||| |||||||| || || |||||||| || |||| Sbjct 345994 GCTTCTCCTGCTATGGCCTTGGCCAGCAGTGTCTTTCCAGTCCCAGGTGGCCCTACTAAA 345935 Query 289234 AGAACTCCCTTTGGTACTT-TTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || |||| ||| ||| | | ||||| || | || || || Sbjct 345934 AGAAC-CCCTTTGGGAATTCTTGCTCCAACAGCAGAAAACTTCTCTGGAGTTTTCAAGAA 345876 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||||| || | | || | ||||| |||||| |||||||||||| |||| || Sbjct 345875 TTCAACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCTGCTACATCATCAAATGT 345816 >seq2548 Length=43478 Score = 125 bits (138), Expect = 2e-23 Identities = 326/488 (67%), Gaps = 22/488 (5%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | ||| | || || || ||||| || ||||| | |||| ||| | || Sbjct 26639 TAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATAC---CAGT 26695 Query 288933 -TTGC--TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 |||| | ||| |||||||| ||| |||| |||||||| |||||||| |||||||| Sbjct 26696 GTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATC 26755 Query 288990 ATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTT 289045 |||| |||| |||| | || | |||| ||| |||||||||||||||| Sbjct 26756 ATTT---CCTC------CACCA-ATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTT 26805 Query 289046 CGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACAC 289105 | |||| || | | || || | ||| | | | || | ||| | || | || | Sbjct 26806 CATCAACAAATACAATGCAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTC 26865 Query 289106 GGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAAT 289164 |||| || |||| ||||||| ||||||| ||||| |||||| | || | | || | ||| Sbjct 26866 GGGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCTGAGA-TGGAGAAAAAT 26924 Query 289165 GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGT 289224 | ||| ||||| || || | |||| | || | || ||||| || ||||| || || Sbjct 26925 GGAACACCAGCTTCACCAGCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGA 26984 Query 289225 CCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTC 289284 || | | ||||| || || || | | |||||| ||| | | |||| || || Sbjct 26985 CCAACAAGAAGAACCCCTTTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCGGGCTTC 27044 Query 289285 TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCA 289344 || || ||||| || | ||| ||| || | || || ||||| || || |||||| Sbjct 27045 TTCAAGAATTCCACGACCTCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 27104 Query 289345 GCAAAAGT 289352 |||| || Sbjct 27105 TCAAATGT 27112 >seq1004 Length=361717 Score = 109 bits (120), Expect = 2e-18 Identities = 217/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || | | || || | |||||| || | | Sbjct 237936 CCAATTGCATCAATCTCATCAATAAATACTATACTGGGTGCGCATTGTCTTGCCTCTTGA 237877 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 237876 AATAAGCTTCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCTGAACCA 237817 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | ||| ||||| |||| | || ||||| ||||| Sbjct 237816 GATA-TAGATAGAAAAGGCACCCCAGATTCACCTGCAGTTGCCTTTGCAAGAAGCGTCTT 237758 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||||||||| || || | | ||| | || ||||| | |||||| |||| | || Sbjct 237757 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAACTC-CT 237699 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||||||| |||| |||||| ||| | |||| ||| | ||| | || ||||||| Sbjct 237698 CGTATTTCTTAGGGTTCTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCAT 237639 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 237638 CACAGCCAGCTACATC 237623 >seq659 Length=231277 Score = 105 bits (116), Expect = 2e-17 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | |||||| || |||||| ||| | | | | Sbjct 70261 ATTTCTGACAGTGCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 70202 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || ||||| |||||| || || || ||||| || ||||| | | ||||| Sbjct 70201 TTGAATGTACCCAGTCTCAGATGTCTTGACTGCGGTATCTATAAGACCTTCCCTCCCACC 70142 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | ||| | || || ||| | | |||| | || || || Sbjct 70141 CATTGCATGAAAAAAGAACTCCTGTGGAGTTAACCCACGCAGGTAGGAATTTTCTACAAA 70082 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || || || || ||||| |||| |||| || | | | Sbjct 70081 TCCACGACTTTCTGGTCCATAATCATCTTTAGTGAAGTGGGGCAATGTCCGGTCTATGA- 70023 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||||| ||||||||||| || |||||||||||||| |||| || | | ||||||| | Sbjct 70022 ACCCGTAAGGGATACGCTTACCCTCAACGTTCTGCTGCCCCACACAAGCAGTCATCTGGG 69963 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | || || | | ||| || ||||| || || | ||||| Sbjct 69962 ATATGTTGATAAAACTCCCTTTGGACCCTGCTGTAACCAT 69923 Score = 100 bits (110), Expect = 8e-16 Identities = 102/131 (78%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 ||||||||| |||| || || ||| || || |||||||| |||||||||||||||| Sbjct 70987 GGGAACACCTAGGGTAACATTCT--TTGCACTCA-CACCAGCATAGTGGAAAGTATTCAG 70931 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | |||||||||||| |||||| |||| ||||| |||||| || Sbjct 70930 TGTCATCTGAGTGGCAGGCTCACCAATAGATTGTGCAGCAACGCAACCAATCATTTCGCC 70871 Query 301950 TGGTGCTACAA 301960 |||||||||| Sbjct 70870 AGGTGCTACAA 70860 >seq174 Length=291255 Score = 100 bits (110), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| || || |||| ||| ||||| ||||| |||||||| |||| || || Sbjct 140059 AAAGTACCCTTTCTTCTGCCCCCCCCTTGATCAACATAACGAGCAGTGCTATTAAACACT 140118 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||| | ||||||||| ||||| | || || || ||||| | ||| | | Sbjct 140119 CGAAGCATAGGCACAATACCATTCGAAGTACTGTTTGTCCCACGAATGTAGCTACCTGTT 140178 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||||||||||||| | |||| || || | |||| ||| ||| ||| Sbjct 140179 GCACGAACATTATGAATGGAGATACCAAGCCCTCCAGCTGATTTGCTAATAATAGCACAT 140238 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | |||| ||||| |||| |||| ||||||| ||| Sbjct 140239 TCCTTCAATGTATCAAAAATTCCTTGAATACTGTCATCTTTCAT 140282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471626232435876