Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq853 194 2e-43 seq7758 190 2e-42 seq547 120 4e-21 seq314 96.9 4e-14 seq639 86.0 8e-11 seq38 86.0 8e-11 >seq853 Length=703183 Score = 194 bits (214), Expect = 2e-43 Identities = 221/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | || ||| Sbjct 573848 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCTCGGAGACCTGG 573907 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||||| ||||| || ||||| || |||||||| ||| ||||| Sbjct 573908 ACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAGAGGCAGCGAAG 573967 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| |||| || | || |||||||| Sbjct 573968 AAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTTCCCAGTGGCGT 574027 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| || | || ||||||||||||||||||| |||||||||||||| |||||| Sbjct 574028 AGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 574087 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||||||| | || | |||| |||| ||||| | ||| ||||||| ||||| Sbjct 574088 ATCTCCCAGATTTCCGGGTATTGGATCGGGAACA-TACAGAAGCGGTCCGGGTT 574140 Score = 123 bits (136), Expect = 3e-22 Identities = 222/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT-CGAGCGAGAT 868749 ||||| |||||| || || | | |||||| || |||||||| |||| | ||| ||| Sbjct 573254 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCT-GAT 573312 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || |||||||||| ||||||||| || ||||| ||| || | || ||| || Sbjct 573313 CAGCTCCATCCACTCGAACGGGTTCTGCACATTGTACATCTTCCCGTACCCAAGCTCAGC 573372 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| | || || || |||||||||||||||| ||| || || ||||||| || | Sbjct 573373 CAGCAGCCTATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCAC 573432 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || ||| | || |||| ||| |||||| |||| ||||| || || | || Sbjct 573433 CAGGGCGCACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTAT 573492 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 |||| | || | || || | |||| || |||| || ||| |||| ||| | Sbjct 573493 GATC-GACTTCACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 573551 Query 868989 CAAAGTCGCAGTGCAACCC 869007 | |||||||||||||| || Sbjct 573552 CGAAGTCGCAGTGCAAACC 573570 Score = 105 bits (116), Expect = 8e-17 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| || || || ||||| ||||| || | || || ||||| | ||| Sbjct 573563 TGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCCG 573622 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| |||||||| || ||||| ||||| |||||||| || || || || ||| Sbjct 573623 CGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCAA 573682 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 |||||| | | || |||||| ||||| | || ||| || |||||| | Sbjct 573683 GCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGCC------GTCGATCCAGCGTAGG 573736 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | |||||| ||| | || | || | || ||||| || |||| || || | Sbjct 573737 GCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTGTTC 573796 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||| | | |||||||| ||||| || | ||||| Sbjct 573797 TTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAG 573834 >seq7758 Length=1097 Score = 190 bits (210), Expect = 2e-42 Identities = 220/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | || ||| Sbjct 712 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCTCGGAGACCTGG 771 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||||| ||||| || ||||| || |||||||| ||| ||||| Sbjct 772 ACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAGAGGCAGCGAAG 831 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| |||| || | || |||||||| Sbjct 832 AAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTTCCCAGTGGCGT 891 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| || | || ||||||||||||||||||| |||||||||||||| |||||| Sbjct 892 AGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 951 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||||||| | || | |||| |||| ||||| | ||| || |||| ||||| Sbjct 952 ATCTCCCAGATTTCCGGGTATTGGATCGGGAACA-TACAGAAACGGTCCGGGTT 1004 Score = 120 bits (132), Expect = 4e-21 Identities = 221/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT-CGAGCGAGAT 868749 ||||| |||||| || || | | |||||| || |||||||| |||| | ||| ||| Sbjct 118 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCT-GAT 176 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||||||| ||||||||| || ||||| ||| || | || ||| || Sbjct 177 CAGCTCCATCCATTCGAACGGGTTCTGCACATTGTACATCTTCCCGTACCCAAGCTCAGC 236 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| | || || || |||||||||||||||| ||| || || ||||||| || | Sbjct 237 CAGCAGCCTATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCAC 296 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || ||| | || |||| ||| |||||| |||| ||||| || || | || Sbjct 297 CAGGGCGCACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTAT 356 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 |||| | || | || || | |||| || |||| || ||| |||| ||| | Sbjct 357 GATC-GACTTCACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 415 Query 868989 CAAAGTCGCAGTGCAACCC 869007 | |||||||||||||| || Sbjct 416 CGAAGTCGCAGTGCAAACC 434 Score = 105 bits (116), Expect = 8e-17 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| || || || ||||| ||||| || | || || ||||| | ||| Sbjct 427 TGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCCG 486 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| |||||||| || ||||| ||||| |||||||| || || || || ||| Sbjct 487 CGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCAA 546 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 |||||| | | || |||||| ||||| | || ||| || |||||| | Sbjct 547 GCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGCC------GTCGATCCAGCGTAGG 600 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | |||||| ||| | || | || | || ||||| || |||| || || | Sbjct 601 GCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTGTTC 660 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||| | | |||||||| ||||| || | ||||| Sbjct 661 TTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAG 698 >seq547 Length=418891 Score = 120 bits (132), Expect = 4e-21 Identities = 221/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT-CGAGCGAGAT 868749 ||||| |||||| || || | | |||||| || |||||||| |||| | ||| ||| Sbjct 380530 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCT-GAT 380588 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||||||| ||||||||| || ||||| ||| || | || ||| || Sbjct 380589 CAGCTCCATCCATTCGAACGGGTTCTGCACATTGTACATCTTCCCGTACCCAAGCTCAGC 380648 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| | || || || |||||||||||||||| ||| || || ||||||| || | Sbjct 380649 CAGCAGCCTATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCAC 380708 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || ||| | || |||| ||| |||||| |||| ||||| || || | || Sbjct 380709 CAGGGCGCACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTAT 380768 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 |||| | || | || || | |||| || |||| || ||| |||| ||| | Sbjct 380769 GATC-GACTTCACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 380827 Query 868989 CAAAGTCGCAGTGCAACCC 869007 | |||||||||||||| || Sbjct 380828 CGAAGTCGCAGTGCAAACC 380846 >seq314 Length=639720 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| |||||| ||| | ||| || ||||||| || Sbjct 297260 GCTGCAAACTATCTGAACATCAAGAGTCTGCTGGATTTATCCTGCCAGACTGTGGCTGAC 297319 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| |||||||||||||||||| || Sbjct 297320 ATGATCAAGGGAAAGACACCTGAGGAGATTCGCAAGACCTTTAACATCCAG 297370 >seq639 Length=266865 Score = 86.0 bits (94), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || || ||| ||| || ||| | || |||||||||||||| |||| || | Sbjct 79260 TGGCGAGCTCACCGGGCAGGACCAGCCTGACCGCGGTCTGGATCTCCCGCGACGTAATGG 79201 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATCATG 1254464 || |||||| || | |||| || |||||| ||| ||| |||| ||| Sbjct 79200 TGGGCTTCTTGTTGTAGCGAGCCAATCGCGAGGCCTCC-TGCGCGAGCTTCTCGAATATG 79142 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| || |||||||| | ||| | |||| | ||||| || | ||||||||| Sbjct 79141 TCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTCGAGATCCCGATATCGGGGTGC 79082 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||| || |||||| ||||| Sbjct 79081 ACTTGCTTCAGGACCTTGAAGATG 79058 >seq38 Length=636309 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | |||||||| ||||| || || ||| || |||| || || Sbjct 53568 GCTGCAAACTACTTGAACATCAAGAGCCTGCTGGACCTGACATGCCAGACTGTTGCGGAC 53509 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || ||||||||||| |||||||| || |||||| ||| Sbjct 53508 ATGATCAAGGGGAAGACCCCAGAGGAGATCCGAAAGACCTTCAATATCAAGAACG 53454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106306407596916