Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7758 176 7e-38 seq853 176 7e-38 seq639 123 4e-22 >seq7758 Length=1097 Score = 176 bits (194), Expect = 7e-38 Identities = 230/318 (72%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| || || || ||||| | ||||||||||| ||| Sbjct 441 TCGCGA--GATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGC 498 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || || ||||| |||||||| || || || || ||| |||||| | ||| Sbjct 499 CAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACG 558 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | |||||| ||||| | || ||| || |||||| | ||||||| ||| Sbjct 559 ATCCGCTCCGCAAACGATTCTGAGCCGTC------GATCCAGCGTAGGGCCCACTGGGCC 612 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || ||| | || |||| | || ||||| || |||| || || ||||||| | | | Sbjct 613 TTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTGTTCTTCTCGTCTGAG 672 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| || | |||||| ||| |||| ||||||||||| ||||||||| Sbjct 673 TCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCG 732 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 733 ATCTGGAAGCCGTAGAAG 750 Score = 145 bits (160), Expect = 1e-28 Identities = 177/237 (75%), Gaps = 16/237 (7%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| ||||||||||| | ||||| || ||||| || |||||| Sbjct 757 GCCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCG 816 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||| |||||||| ||||| |||| ||||| |||| || | || Sbjct 817 TCAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGG----GC 872 Query 796270 GAGA----CCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 ||| |||||||| ||| ||| || | || ||||||||||||||||| ||| Sbjct 873 TAGAAGTTCCCAGTGG--CGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAG 930 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||||||||| ||||||||||||| || |||| |||| |||| ||||||| Sbjct 931 GAGGCCTCGGCCTTCTTGTACATCTCCCAGATTTCCG--GGTATTGGATCGGGAACA 985 >seq853 Length=703183 Score = 176 bits (194), Expect = 7e-38 Identities = 230/318 (72%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| || || || ||||| | ||||||||||| ||| Sbjct 573577 TCGCGA--GATCAACTCGTTTGAGAACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGC 573634 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || || ||||| |||||||| || || || || ||| |||||| | ||| Sbjct 573635 CAAAATATCGCGCAAAAACTCCCCGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACG 573694 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | |||||| ||||| | || ||| || |||||| | ||||||| ||| Sbjct 573695 ATCCGCTCCGCAAACGATTCTGAGCCGTC------GATCCAGCGTAGGGCCCACTGGGCC 573748 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || ||| | || |||| | || ||||| || |||| || || ||||||| | | | Sbjct 573749 TTCTTCGTGACGCAGGGAATGGTATCGATCGCATGAAAAAGCCTGTTCTTCTCGTCTGAG 573808 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| || | |||||| ||| |||| ||||||||||| ||||||||| Sbjct 573809 TCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCG 573868 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 573869 ATCTGGAAGCCGTAGAAG 573886 Score = 149 bits (164), Expect = 1e-29 Identities = 190/257 (74%), Gaps = 16/257 (6%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| ||||||||||| | ||||| || ||||| || |||||| Sbjct 573893 GCCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCG 573952 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||| |||||||| ||||| |||| ||||| |||| || | || Sbjct 573953 TCAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGG----GC 574008 Query 796270 GAGA----CCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 ||| |||||||| ||| ||| || | || ||||||||||||||||| ||| Sbjct 574009 TAGAAGTTCCCAGTGG--CGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAG 574066 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAA 796381 |||||||||||||| ||||||||||||| || |||| |||| |||| ||||||| | Sbjct 574067 GAGGCCTCGGCCTTCTTGTACATCTCCCAGATTTCCG--GGTATTGGATCGGGAACATAC 574124 Query 796382 CAAAGCGATTGGGGTTC 796398 ||||| | |||||| Sbjct 574125 AGAAGCGGTCCGGGTTC 574141 >seq639 Length=266865 Score = 123 bits (136), Expect = 4e-22 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| || |||||||| |||| || || ||| ||| || Sbjct 79299 ACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCACCGGGCAGGA 79240 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 ||| | || |||||||||||||| || | || ||| |||||| ||| | Sbjct 79239 CCAGCCTGACCGCGGTCTGGATCTCCCGCGACGTAATGGTGGGCTTCTTGTTGTAGCGAG 79180 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||| || |||||| ||| ||| |||| |||||||||| || ||||||| Sbjct 79179 CCAATCGCGAGGCCTC-CTGCGCGAGCTTCTCGAATATGTCGTTGATGAAGCTGTTCATG 79121 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | ||| | ||||| || | ||||||||||| ||||| || |||||| Sbjct 79120 ATCCCCATGGCCTTGCTCGAGATCCCGATATCGGGGTGCACTTGCTTCAGGACCTTG 79064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915166910954972