Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2255 149 5e-31 seq486 134 1e-26 seq736 120 2e-22 seq1231 96.9 3e-15 seq113 87.8 1e-12 >seq2255 Length=141741 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || ||||| || ||||||||||| || || |||| ||| | Sbjct 96257 CGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCG 96198 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| ||| | ||||| || ||||| || || ||||||||||| ||| Sbjct 96197 TCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTG 96138 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | ||| ||||| ||| ||||| ||||| || Sbjct 96137 TCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATG 96078 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | ||||| |||||||||||||| Sbjct 96077 GTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||| || ||||| || || || ||||| || || || | |||||| | Sbjct 140485 CGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCA 140544 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | |||| || ||||| ||||| ||||||||||| ||| Sbjct 140545 TCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTG 140604 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| | || | |||||||| ||| || || || || || Sbjct 140605 TCTTGGATCTTGGCTTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCGAGGGTGATG 140664 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| ||||| |||||||| Sbjct 140665 GTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 140699 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || || || || || ||||||||||| || || ||| Sbjct 139789 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 139848 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || || || ||||| ||| | ||||| || ||||| || || || Sbjct 139849 AGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 139908 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||| || ||| | || | ||| ||||| ||| ||| Sbjct 139909 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATAGTATCAGAGCTTTCCACT 139968 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || ||||| || ||||| ||||| || ||||| Sbjct 139969 TCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 140015 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || || ||||||||||| |||||||| || |||| |||||| | Sbjct 96029 CGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCA 95970 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | || | || ||||| ||||| ||||| ||||| ||| Sbjct 95969 TCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTG 95910 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | || || || ||| ||||| | || || Sbjct 95909 TCCTGGATCTTTGCCTTGACATTGTCAATGGTATCTGAGCTTTCAACTTCCAAGGTGATT 95850 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| || ||||| Sbjct 95849 GTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 95815 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || ||||||| || | || ||||| ||||| ||||||||||| ||| Sbjct 140017 CCACCACGCAACCGAAGCACCAGGTGCAAAGTTGATTCCTTTTGGATGTTATAATCAGCA 140076 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || ||||| | || | || ||||| ||||| ||| Sbjct 140077 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATTAGCCTCTGCTGGTCCGGGGGA 140136 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || |||||||| |||||| | |||| || || || ||| || Sbjct 140137 ATGCCTTCCTTATCCTG-AATTTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAAC 140195 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| || || ||||| | || || ||||| || ||||| Sbjct 140196 CTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTTGACAAAGATTTGCAT 140243 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| || ||||| || ||||| |||||||| || ||||| || | |||||| Sbjct 140256 ACGAAGCACTAAGTGAAGGGTTGATTCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCC 140315 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || | || ||||| || || || || |||||||| Sbjct 140316 ATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTT 140375 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||||| || || || || | ||| || Sbjct 140376 GTCTTGGATCTTAGCCTTGACATTATCAATCGTGTCGGAGCTCTCAACCTCCAAAGTGAT 140435 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | || ||||||||||| |||||| Sbjct 140436 GGTCTTTCCGGTGAGAGTCTTAACAAATATTTGCATT 140472 >seq486 Length=243247 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || || || ||||| || ||||||||||| || | ||| || Sbjct 17892 ACGAAGCACTAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCC 17951 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || |||||| | || | || ||||||||||| || | ||||||||| Sbjct 17952 GTCCTCAAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGGGAAACCCTCTTT 18011 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| ||| | || | || |||||| || || |||||||| || Sbjct 18012 GTCTTGGATTTTAGCTTTCACATTGTCAATTGTATCAGAACCATCAACATCAAGAGTGAT 18071 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | ||||| ||||| ||||||||| Sbjct 18072 TGTCTTCCCAGTCAGAGTTTTGACAAAAATCTGCATT 18108 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| || || || || | || | || ||||| || || ||||| ||||| || Sbjct 20049 CCACCCCTTAATCGAAGAACAAGGTGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGCC 20108 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | || || |||||| |||| | || ||||| || |||||| Sbjct 20109 AAAGTCCTACCATCTTCCAACTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGCGGA 20168 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || |||| | || || |||||| | || | |||||| || || || Sbjct 20169 ATCCCCTCCTTATCCTGTA-TCTTAGTCTTGACAATATCAATAGTGTCCGAGCTCTCCAC 20227 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| ||||| || | |||||| |||||||||||||| Sbjct 20228 CTCAAGGGTGACAGTCTTGCCGGTAAGGGTTTTCACAAATATCTGCAT 20275 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || || | ||| | |||||||| || || ||||||||||| ||| Sbjct 19331 CCACCTCGCAAACGGAGAACAAGATGCAAGGTGGATTCCTTCTGGATGTTATAATCAGCA 19390 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | ||| || || || || |||||| | || | || ||||| || || || Sbjct 19391 AGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 19450 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| ||| || | |||||| | |||| || || ||| || || Sbjct 19451 ATTCCTTCTTTATCTTG-AATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCCAC 19509 Query 29739 TTCAAGAG---TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||| | ||||| || ||||| || || || ||||||| ||||| Sbjct 19510 CTCCAGAGTGATGATAGTCTTTCCAGTCAAAGTCTTGACAAATACTTGCAT 19560 Score = 95.1 bits (104), Expect = 9e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| ||| || || || | || | || ||||| || |||||||||||||| || Sbjct 19790 CCACCCCGCAATCGAAGAACAAGGTGCAAAGTAGATTCCTTCTGAATGTTATAATCAGCC 19849 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | || || |||||| |||| | || ||||| || || ||| Sbjct 19850 AAAGTCCTACCATCTTCCAACTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGA 19909 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGA 29729 || ||||||||||||||| || || || |||||| | || | |||||| || Sbjct 19910 ATTCCCTCTTTGTCTTGT-ATCTTAGTCTTGACAATATCAATAGTGTCCGA 19959 >seq736 Length=481145 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || ||||| || || || ||||| || || || | ||| || Sbjct 406261 ACGAAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCC 406320 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || ||| | ||||| |||||||| ||||| || |||||||| || Sbjct 406321 ATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGGATACCCTCCTT 406380 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| || || || || ||||| || Sbjct 406381 GTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTGAT 406440 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || ||||| |||||||| Sbjct 406441 GGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 406476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||||||| || || || || || || ||||| || || || Sbjct 406934 CCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCG 406993 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || || || || || || | || | | |||||||| || || Sbjct 406994 AGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGG 407053 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | |||||||| || || Sbjct 407054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 407113 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | |||||| || || || ||||| Sbjct 407114 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || ||||||||||| || || | || | Sbjct 405805 ACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAGTCAGCCAGAGTCCTTCC 405864 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| || ||||| || || |||||||| || || Sbjct 405865 ATCCTCCAACTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTT 405924 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || || || || | ||| || Sbjct 405925 GTCCTGGATCTTGGCCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACCTCCAAAGTGAT 405984 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| || ||||| |||||||| Sbjct 405985 GGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 406020 >seq1231 Length=361431 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| | || ||||| ||||| || || || ||||||||||||||||| || Sbjct 154355 TCCTCCCCTCAGCCTCAAAACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGC 154414 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || | ||| || |||||| | |||||||| || || || || || Sbjct 154415 AAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGGTCAGGAGG 154474 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || || || || || Sbjct 154475 GATGCCTTCCTTATCCTGAAA 154495 >seq113 Length=202937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| | || |||| |||||||| || || || || ||||||||||| || Sbjct 28786 TCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGC 28845 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || ||| || | ||| || |||||| | |||||||| ||||| || || || Sbjct 28846 AAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGAGG 28905 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 || || || || || || || Sbjct 28906 GATGCCTTCCTTATCCTGAAA 28926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385171556570868