Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq96 352 3e-92 seq938 122 1e-22 >seq96 Length=556063 Score = 352 bits (390), Expect = 3e-92 Identities = 535/756 (71%), Gaps = 4/756 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || ||||| ||||| ||||||||||| || | || Sbjct 6942 TGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCT 7001 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| || || ||| | ||||| || | Sbjct 7002 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCAT 7061 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| ||||||| | || ||||||||| | ||||| ||||||| | || | || | Sbjct 7062 GGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAG 7121 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || || ||| || | | | || ||| | | |||| ||||||||| | | | Sbjct 7122 TTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCAC 7181 Query 179189 AGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 | || || ||| | || ||||| ||| | || || ||||||| ||| || ||||| || Sbjct 7182 AAGGAGACTTTACT-CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACAT 7240 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || |||| ||||| || || ||| | ||||| |||||||| || || ||| || Sbjct 7241 GGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAA 7300 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || || ||| |||| || || ||| |||||| Sbjct 7301 T-TGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATT 7359 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || || || || || | ||||||| |||||||| |||||||| || || Sbjct 7360 CCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGC 7419 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 || ||| ||||| | || || || ||||| || || || |||||| | ||||| ||||| Sbjct 7420 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 7479 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||||||||| || | |||| | ||||||| | | |||||||||||| | || Sbjct 7480 TATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTAC 7539 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 | |||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 7540 TATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 7599 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| || || || ||||| ||||| || | || || |||||||| || ||||| Sbjct 7600 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTT 7659 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTT 179702 ||||| | ||| |||||| ||||||| || || Sbjct 7660 TAGGGTTGCTTTTTCCAATAAATGTTGGTTACATTT 7695 >seq938 Length=1460269 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || | |||||| ||||| ||||| || || || || || ||||| || || Sbjct 244812 TTTGAGTGCCCGGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTA 244871 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 |||||||| || | |||||| | || ||| | |||||||| ||| | || ||||| | Sbjct 244872 CCCTACTCTTGCAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGT 244931 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || || ||||| || ||| |||||||||||||| || |||| | |||||| || | Sbjct 244932 GTGGACCAGTCAGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTT 244991 Query 138697 ACTTGCGTAGCATACCCCACATCCGAT 138723 ||||| || || || || |||| ||| Sbjct 244992 ACTTGTGTGGCTTATCCTTCATCTGAT 245018 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || | |||||| ||||| ||||| || || || || || ||||| || || Sbjct 250343 TTTGAGTGCCCGGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTA 250402 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 |||||||| || | |||||| | || ||| | |||||||| ||| | || ||||| | Sbjct 250403 CCCTACTCTTGCAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGT 250462 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || || ||||| || ||| |||||||||||||| || |||| | |||||| || | Sbjct 250463 GTGGACCAGTCAGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTT 250522 Query 138697 ACTTGCGTAGCATACCCCACATCCGAT 138723 ||||| || || || || |||| ||| Sbjct 250523 ACTTGTGTGGCTTATCCTTCATCTGAT 250549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605590371115680