Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2255 105 4e-18 seq736 100 2e-16 seq176 89.7 3e-13 >seq2255 Length=141741 Score = 105 bits (116), Expect = 4e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||| || || ||| ||| || || ||||||||||||| Sbjct 95358 ACCACCACGGAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 95299 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | || || || ||||| |||| | |||||| ||| | || Sbjct 95298 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 95239 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || | || |||| ||| | |||||| ||| || Sbjct 95238 AATGCCTTCCTTGTCCTGGATCTT-GGCTTTGACATTGTCAATGGTGTCAGAGCT---TT 95183 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || ||||| | ||||| |||||||||||||| Sbjct 95182 CAACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 95131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || || || ||| ||||| |||||||| |||| Sbjct 139789 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 139848 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||| || || || ||||||||||| | |||||| ||| | || Sbjct 139849 AGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 139908 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| || ||||| ||||| ||| |||| ||| | || || ||| ||| Sbjct 139909 ATACCCTCCTTGTCCTGGATTTTAGCCTTC-ACATTGTCAATAGTATCAGAGCT---TTC 139964 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || || || || || || ||||| |||||||| |||||| Sbjct 139965 CACTTCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCATA 140016 >seq736 Length=481145 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||||||| || || ||| || || |||||||| || | Sbjct 406933 ACCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGC 406992 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || |||||||| || || | ||||||||||||| | || Sbjct 406993 GAGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 407052 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | || | ||| | |||||| ||| |||| Sbjct 407053 GATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACGTTGTCGATGGTGTCAGATGACTCCA 407111 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| || ||||| ||||| Sbjct 407112 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| || || || || ||| || || |||||||| || | | Sbjct 406706 CCACCACGCAGACGAAGCACTAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCG 406765 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || ||||| || |||| | |||||| ||| | || Sbjct 406766 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 406825 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| || | | | |||| ||||||| ||| || Sbjct 406826 ATACCTTCCTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCGAC 406884 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | || || || |||||||||||| Sbjct 406885 CTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATA 406933 >seq176 Length=136227 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| ||||| |||||| || ||||||||||| | || || | | | || || Sbjct 88636 CACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCATCCTC 88695 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 |||||| || || ||||| |||| | |||||||||| | || | ||||| ||||| Sbjct 88696 CAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTG 88755 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 ||| ||| ||| |||| ||| | || || ||| || || || | || |||| Sbjct 88756 AATCTTCGCCTTC-ACATTGTCAATCGTATCAGAGCT---CTCGACCTCCAAAGTTATCG 88811 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || ||||| | || || || || ||||||||| Sbjct 88812 TCTTCCCTGTAAGGGTCTTCACGAAAATCTGCATA 88846 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || || || | ||| || ||||| |||||||| |||| Sbjct 89074 ACCACCTCTCAATCGAAGAACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGGC 89133 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 ||| || || |||| |||||||| ||||| || |||||||| | |||||| ||| Sbjct 89134 GAGGGTTCGGCCGTCCTCCAATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCT 89188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| || | ||| ||| ||||| ||||||||||| | Sbjct 88846 ACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGC 88905 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || ||||| || ||||| || || | | |||||||||| | || Sbjct 88906 AAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGG 88965 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || |||| || | ||| ||| || || Sbjct 88966 GATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGAC 89025 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || |||| ||||| || || ||||||||| Sbjct 89026 CTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCATA 89074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328663346300160