Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq96 403 2e-107 seq211 102 9e-17 seq553 86.0 7e-12 seq361 86.0 7e-12 >seq96 Length=556063 Score = 403 bits (446), Expect = 2e-107 Identities = 556/772 (72%), Gaps = 8/772 (1%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || || ||||| ||||| ||||||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | || | || |||||| || || || || ||| Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || ||||| ||||| | | || |||||||| | ||||| ||| ||| | Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || | || || || || || ||| || | | | || ||| | | |||| |||||| Sbjct 7112 ACCGTCGCAGTTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGT 7171 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||| | | ||||| ||||| || ||||| ||| | || || | ||| | |||||| Sbjct 7172 CCTAAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTT 7231 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737 ||||| || || || |||| || |||||||||||| |||| ||||||||| ||||||| Sbjct 7232 GCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 7291 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 |||| | | | || ||||| ||||| || || |||||| ||| |||| ||||||||| Sbjct 7292 TCTATTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGT 7350 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 |||||||| || ||||| || ||||||| | ||||| ||||| || ||||| || Sbjct 7351 TTATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGG 7410 Query 159858 GGTAGCAGCAATCTTTAGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914 |||||||| || ||| ||||| || || |||| |||||||| | || ||||| | Sbjct 7411 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATT 7467 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| || |||||||||||||||||||| | | || | || ||||| ||||| || Sbjct 7468 GAACCCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTAT 7527 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 |||||||||||| |||| || || || ||||||||||| || ||||| ||||| Sbjct 7528 TCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 7587 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || ||| | || ||||||| ||||| |||||||| |||||||| | || ||||| || Sbjct 7588 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTG 7647 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTC 160146 ||| || ||||| | ||||| ||||| || || | ||| | |||||| || Sbjct 7648 GTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTTGTC 7699 Score = 165 bits (182), Expect = 9e-36 Identities = 189/254 (74%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 160138 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 160197 ||||| || ||||| ||||| || || | | | | |||| || |||| | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 160198 GGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257 ||||| || | ||||| ||||| || || ||||| |||||| || | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317 |||| |||||||||||| ||||||||||| || || || || |||||||| |||||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCT 160377 |||||||| || ||||| || ||||||||| |||| |||||||||| || ||||| Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 160378 AGAGGTAACGCACT 160391 | || ||||| || Sbjct 9114 CGTGGAAACGCTCT 9127 >seq211 Length=154590 Score = 102 bits (112), Expect = 9e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 159759 CAATGCTA-TTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATC 159817 |||||| | |||| ||||| |||| |||||||||||||| |||||||| || |||| Sbjct 29659 CAATGCGAATTGCATTCTCCGGTCTAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATC 29718 Query 159818 CACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT 159877 | || ||||||||| | ||||| || || || ||||| || |||||||| || ||| ||| Sbjct 29719 CGCTAGGTCAGTCTGCTTGGTTTTTGGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGAT 29778 Query 159878 T 159878 | Sbjct 29779 T 29779 >seq553 Length=724905 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/164 (72%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 159925 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCT 159984 |||||| ||||||||||||| | | || | || |||| || || || ||||||||| Sbjct 591237 CATATGGTGGGAGTTGCTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCT 591178 Query 159985 ACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAG 160044 || || | || || || ||||||||||| || ||||| ||||| | ||| | Sbjct 591177 ACCCTAAAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTGTGTTTTTAAC 591118 Query 160045 CCTACTCAAG---AA---GAAGAGACTTATTCTATGGTCACTGC 160082 || ||||||| || ||||| |||||||| |||||||| || Sbjct 591117 CCAACTCAAGCTCAAGCTGAAGAAACTTATTCAATGGTCACCGC 591074 >seq361 Length=272510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 160213 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAG 160272 || ||||| || || || || | | |||| || |||||||||||||||||||||||| Sbjct 99676 CTGCGTGCCTATGAATTTGTTACTGAGGA-ATACCTGCAGCAGAAGATCCTGAATTTGAG 99734 Query 160273 ACCTTCTACACCAAGAACATCCTATTGAATGAAGG-ACTTCGTGCTTGGATGGCACCT 160329 || |||||| |||| || || || | || |||| |||| |||||||||||||| || Sbjct 99735 ACTTTCTACGCCAAAAATATTCTTATAAACCAAGGTACTT-GTGCTTGGATGGCAGCT 99791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572951311905600