Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq96 311 1e-79 seq938 89.7 6e-13 >seq96 Length=556063 Score = 311 bits (344), Expect = 1e-79 Identities = 526/759 (69%), Gaps = 2/759 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || ||||| ||||| ||||||||||| || | || Sbjct 6942 TGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCT 7001 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| || || ||| | ||||| || | Sbjct 7002 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCAT 7061 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| ||||| | | || ||||||||| | || || ||||||| | || | || | Sbjct 7062 GGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAG 7121 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || || ||| || | | | || ||| | | |||| ||||||||| | | | Sbjct 7122 TTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCAC 7181 Query 179473 -AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 ||| || ||| | || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 7182 AAGGAGACTTTAC-TCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACAT 7240 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGT 179591 || || |||| || || ||||| ||| | | ||||||||||||||||| ||| Sbjct 7241 GGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAA 7300 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | ||||||| ||||| || || || ||| ||| |||| ||| || || ||| ||| Sbjct 7301 TTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTC 7360 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| | || |||| ||||||||| ||||| |||||||| || || Sbjct 7361 CTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCT 7420 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || || | ||| | || || | || || || || || ||||| | ||||| || ||| Sbjct 7421 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 7480 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 ||||||||||||||||| | | || | || ||| | ||||||| ||||| | |||| Sbjct 7481 ATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACT 7540 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 |||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 7541 ATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 7600 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 || || | ||||| |||||||| |||||||| | || ||||| ||||| || ||||| Sbjct 7601 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTT 7660 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTC 179990 | |||| ||||| || || | ||| | |||||| || Sbjct 7661 AGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTTGTC 7699 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 179982 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 180041 ||||| || ||||| ||||| || || | | | | |||| || |||| | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 180042 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAA 180101 ||||| || || ||||| ||||| || || ||||| |||||| ||| | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 180102 GATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCA 180161 |||| || |||||||| ||||||||||| || ||||| | |||||||| | ||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 180162 TGGTTGGCACCAGTTGATCAACCACATGA 180190 ||| |||| | ||||| || ||||| Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGA 9082 >seq938 Length=1460269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 176336 GGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTG 176395 ||||||| || || |||||||| || || || || ||| | || | |||||||| Sbjct 244823 GGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTG 244882 Query 176396 TCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAG 176455 | |||||| |||| || || |||||||||||| | | | || ||| || ||| Sbjct 244883 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTC 244942 Query 176456 TGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATC 176515 |||||| ||||| |||||||| || ||||| ||| ||| | || ||||| || | Sbjct 244943 AGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGC 245002 Query 176516 TTATCCT 176522 ||||||| Sbjct 245003 TTATCCT 245009 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 176336 GGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTG 176395 ||||||| || || |||||||| || || || || ||| | || | |||||||| Sbjct 250354 GGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTG 250413 Query 176396 TCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAG 176455 | |||||| |||| || || |||||||||||| | | | || ||| || ||| Sbjct 250414 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTC 250473 Query 176456 TGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATC 176515 |||||| ||||| |||||||| || ||||| ||| ||| | || ||||| || | Sbjct 250474 AGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGC 250533 Query 176516 TTATCCT 176522 ||||||| Sbjct 250534 TTATCCT 250540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605932727682240