Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq96 342 6e-89 >seq96 Length=556063 Score = 342 bits (378), Expect = 6e-89 Identities = 543/771 (70%), Gaps = 6/771 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| ||||| |||||||| || |||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || |||| |||| ||| ||| | ||| | || |||||| || || ||||| || Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| ||||||||||||| | | || ||||||||| | || || |||||| | Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || | ||||| |||||| ||| | | | | || ||| || || || || ||||| Sbjct 7112 ACCGTCGCAGTTTCCACTCCGGCTAATAGTTTAGCACACTCT-TTATTGTTACTATGGGG 7170 Query 160138 TCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 |||| | || ||||| || ||| || | ||| ||| | || || || |||| ||||| Sbjct 7171 TCCTAAAGCACAAGGAGACTTTACTC-GTTGGTGTCAATTAGGCGGTCTATGGACTTTTG 7229 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || || ||||| || |||| ||||| || || ||| | ||||| |||||||| || | Sbjct 7230 TTGCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 7289 Query 160257 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT 160315 | ||| || | | || ||||| ||||| || || |||||| ||| |||| ||| ||| Sbjct 7290 GATCTATTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTT 7348 Query 160316 GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 160375 || |||||||| || || || | ||||||| |||||||||| || || ||| Sbjct 7349 GTTTATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTT 7408 Query 160376 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTT 160435 || || ||||| || ||| ||||| | | || | ||||| ||||| || ||||| | Sbjct 7409 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 7468 Query 160436 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATC 160495 ||||| || |||||||||||||||||||| | | || | || ||| | |||| || Sbjct 7469 AACCCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATT 7528 Query 160496 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 160555 ||||| | |||| |||| || || | | ||||||||| || |||||||| || Sbjct 7529 CATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 7588 Query 160556 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160615 || ||| | | || || | ||||| |||||||| |||||||| | || ||||| ||| Sbjct 7589 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGG 7648 Query 160616 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTC 160666 || || ||||| | |||| ||||| || || | ||| | |||||| || Sbjct 7649 TCCCAAATCTTTAGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTTGTC 7699 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 ||||| || || || || ||||| || || ||||| ||| || || | ||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 |||| ||||||||||| ||||||||||| || || || | |||||||| | ||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCT 160897 ||| | || || || || || ||||| ||| |||| |||| || || ||||| || Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 160898 AGAGGCAACGCCCTTTAAT 160916 | || ||||| ||||||| Sbjct 9114 CGTGGAAACGCTCTTTAAT 9132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552403518723840