Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7758 98.7 1e-15 seq853 98.7 1e-15 seq174 89.7 7e-13 >seq7758 Length=1097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || || | |||||||||| || || ||||| || || || Sbjct 409 AAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTC 468 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 ||||||||||||| || ||||| || ||||||||||| || |||||| | || || || Sbjct 469 AGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGC-GCAAAAACTCCCCGAGAA 527 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG-TAACTTGTATCA-TTA 39790 ||| || ||||| || ||||| || || | || | ||||| ||| | | | Sbjct 528 GAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTGAGCCG 585 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | ||||| | || |||||| | || || || || || || || ||| Sbjct 586 TCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCA 645 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||| || | || || || || || | || || || | | || || ||| Sbjct 646 TGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTAC 705 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| || || || ||||| || ||||| || Sbjct 706 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 749 >seq853 Length=703183 Score = 98.7 bits (108), Expect = 1e-15 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || || | |||||||||| || || ||||| || || || Sbjct 573545 AAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTC 573604 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 ||||||||||||| || ||||| || ||||||||||| || |||||| | || || || Sbjct 573605 AGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGC-GCAAAAACTCCCCGAGAA 573663 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG-TAACTTGTATCA-TTA 39790 ||| || ||||| || ||||| || || | || | ||||| ||| | | | Sbjct 573664 GAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTGAGCCG 573721 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | ||||| | || |||||| | || || || || || || || ||| Sbjct 573722 TCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGATCGCA 573781 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||| || | || || || || || | || || || | | || || ||| Sbjct 573782 TGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTAC 573841 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| || || || ||||| || ||||| || Sbjct 573842 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 573885 >seq174 Length=291255 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 |||||||| || || | | || |||| || ||||||| |||| | || |||||| Sbjct 139499 TCATATTGGGTGTACAACTTCTCAAATTTTTCACCCCAAAGATCAGCTAAGCCAGGAGCC 139558 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 ||||||||||| | ||| ||||| ||||| | | |||| || ||| || ||||| Sbjct 139559 TCATTTGGACAAAACAAAGACCATTTCCCATCACCTTGGACTCTTTCCATGAAGAGATCA 139618 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| ||||| ||| ||||||| | | || |||||| Sbjct 139619 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 139662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686821665618720