Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq736 95.1 1e-14 seq2255 91.5 1e-13 seq486 86.0 5e-12 seq176 82.4 6e-11 >seq736 Length=481145 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || || || || |||||||| Sbjct 406934 CCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCG 406993 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | ||||||||||| ||||| || || Sbjct 406994 AGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGG 407053 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | | || | ||||| | | || || Sbjct 407054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 407113 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || |||||||| ||||||||||| Sbjct 407114 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 >seq2255 Length=141741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || |||||||| |||||||| Sbjct 96269 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 96210 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| |||||||| || || || | || | | ||| || || || || Sbjct 96209 AGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 96150 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||| ||| |||| | || | ||| || | | ||| ||| Sbjct 96149 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACT 96090 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||| || ||||||||||||||||| || |||||| Sbjct 96089 TCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCATA 96042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| ||| | ||||| || | || || |||||||| || || ||||| Sbjct 96041 CCACCACGCAGCCGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCA 95982 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| ||||| ||| | ||||| | ||| || ||||| || Sbjct 95981 AGGGTGCGTCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 95922 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | || | || |||| | ||||||| Sbjct 95921 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCTGAGCTTTCAACT 95862 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || || || || || ||||||||||||||| Sbjct 95861 TCCAAGGTGATTGTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCATA 95814 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | || || || || || || ||||||||| Sbjct 140473 CCACCGCGGAGTCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 140532 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || || | || || | ||| || ||||| || Sbjct 140533 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 140592 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| ||| | | || | ||||| | | |||||| Sbjct 140593 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATCGTGTCAGAGCTTTCAACC 140652 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || |||||||||||||| ||||| Sbjct 140653 TCGAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 140699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || |||||||| ||||||||| Sbjct 139789 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 139848 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || || ||||| || || || |||| | | ||| || || || || Sbjct 139849 AGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 139908 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||| || |||| | || | ||| || | | ||| ||| Sbjct 139909 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATAGTATCAGAGCTTTCCACT 139968 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | || || |||| |||||||||||||||||||||| Sbjct 139969 TCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCATA 140016 >seq486 Length=243247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || || || || || | | || |||| || || || || || Sbjct 17911 GTAGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCGTCCTCAAGTTGCTTCCCA 17970 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | ||| |||||||| || | ||||||||| || ||| || |||| Sbjct 17971 GCAAAAATGAGCCTCTGCTGATCCGGAGGGAAACCCTCTTTGTCTTGGATTTTAGCTTTC 18030 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | | ||||| || ||||| || | || || ||||||||| Sbjct 18031 ACATTGTCAATTGTATCAGAACCATCAACATCAAGAGTGATTGTCTTCCCAGTCAGAGTT 18090 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 18091 TTGACAAAAATCTGCAT 18107 >seq176 Length=136227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | || || || || || || || ||||| || ||||||||| Sbjct 89075 CCACCTCTCAATCGAAGAACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGGCG 89134 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || | || || || ||| |||| | | ||| || || || || Sbjct 89135 AGGGTTCGGCCGTCCTCCAATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGG 89194 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| |||| | | || | || || | | || ||| Sbjct 89195 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGACT 89254 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||||| | || || || || ||||| || |||||||||||| Sbjct 89255 TCTAGGGTTATTGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCATA 89302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424881844644576