Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2548 109 7e-19 seq309 105 8e-18 >seq2548 Length=43478 Score = 109 bits (120), Expect = 7e-19 Identities = 303/462 (66%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539 ||||| || || | | ||||| || |||| |||||||| ||||| | ||| Sbjct 26649 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAA---CCACAATGATACCAGTGTTGCCCTCA 26705 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | ||||||| ||||||||||| ||||||||| || Sbjct 26706 AAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCCTCC- 26764 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| |||| | | |||| || || |||||||| ||||||| || ||||| Sbjct 26765 --ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATG 26822 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| ||| || ||| | | ||| ||||| ||||| | ||||| |||||| Sbjct 26823 CAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 26882 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 |||||||| || ||||| | | | ||| || ||||| ||| | |||||| Sbjct 26883 ACAAACATTTCAACAAACTCAGAACCTGAGATGGAGAAAAATGGAACACCAGCTTCACCA 26942 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || || || || | || |||||||| || ||||| ||| | ||||| | ||| Sbjct 26943 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 27002 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 || || || ||| || | |||||||| | ||| | || ||||| | | Sbjct 27003 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCGGGCTTCTTCAAGAATTCCACGACC 27062 Query 11897 TCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || ||| || | ||||| | || | ||| |||||||| Sbjct 27063 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 27104 >seq309 Length=181836 Score = 105 bits (116), Expect = 8e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || || || ||||||||||| | Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | ||| | |||||||||||||||||||||||||| ||||| || Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | || || | || || || || |||||||| || | Sbjct 48115 CGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCCA 48057 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||||| || | || || | ||| || || || || | || || | Sbjct 48056 CAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCCGG 47997 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | ||| || || || |||||||| || ||||| || |||| | | ||| |||| Sbjct 47996 CCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACAGCCTT 47937 Query 11838 GGGGGATCTTGGCACCA 11854 ||||| ||||| ||| Sbjct 47936 TTGGGATTTTGGCTCCA 47920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627952334140800