Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq309 91.5 2e-13 seq2548 86.0 8e-12 >seq309 Length=181836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| || Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || | ||| || ||| || || | || ||||||||| ||||| || |||| Sbjct 48115 CGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCCA 48057 Query 14331 CAAACATCTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 |||||| ||||| || | || || ||| || | || || || || || || | Sbjct 48056 CAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTCGC 48000 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | ||| || || || |||||||| || || || ||| Sbjct 47999 CGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 47959 >seq2548 Length=43478 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || || | ||| ||||| || | |||| ||| || || | | ||||| Sbjct 26648 GTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAA 26707 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| || ||||| | ||||||||| | ||||||||| | Sbjct 26708 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCCTCC--- 26764 Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || | | | |||| || || || ||||||||||| | || || || || Sbjct 26765 ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 26824 Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 ||| ||| || ||| |||| ||| | ||| || |||| ||||| ||||| Sbjct 26825 AGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 26882 Query 14330 ACAAACATCTCCACAAA 14346 |||||||| || ||||| Sbjct 26883 ACAAACATTTCAACAAA 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618356751494880