Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2548 116 4e-21 seq309 91.5 2e-13 >seq2548 Length=43478 Score = 116 bits (128), Expect = 4e-21 Identities = 232/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || ||||| || | |||| ||||| || | |||||| Sbjct 26649 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 26708 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| || |||| |||||||| | ||||||||| || | Sbjct 26709 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCCT---CCA 26765 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 26766 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 26825 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 ||| ||| || || |||| ||| ||||| || || || || || ||||||| Sbjct 26826 GGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 26883 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 ||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 26884 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 26942 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || || | |||||||| || || ||||| Sbjct 26943 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGG 26980 >seq309 Length=181836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| | Sbjct 48235 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCACC 48176 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| || | | ||| | ||||| |||||||||||||||||||| || ||||| Sbjct 48175 CCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATGCA 48116 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || ||||| | || || || | ||||| || | | || ||||| || Sbjct 48115 CGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCCC 48058 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||| ||||| || | || || | || || || || || || || || Sbjct 48057 ACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCCG 47998 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | ||| || || ||||| ||||| || ||||| || Sbjct 47997 GCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGG 47960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583186813367520