Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7758 145 8e-30 seq853 145 8e-30 seq547 84.2 2e-11 >seq7758 Length=1097 Score = 145 bits (160), Expect = 8e-30 Identities = 560/859 (65%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| ||||| || | || |||||| ||| ||||||| Sbjct 971 TACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAG 912 Query 59634 ATTGACCTC-GCCGGAGACCTGAAGGATTGGGA----CAAGCTCAATTACGACGAGCAGC 59688 |||| | ||| | ||||| | ||||| | ||| | || |||| ||| Sbjct 911 GTTGATTTATGCCAG-GACCTACGCCACTGGGAACTTCTAGCCCC----CGGCGAGAAGC 857 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||||||| || || ||||||||||| || ||| || ||||| |||| ||| Sbjct 856 ACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATTGTTTTGGAGAATC 797 Query 59749 TAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808 | | | | || ||||| |||||| | ||||||| || | ||||||| | | Sbjct 796 TCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGAGCCTTCTACGGCTTCC 737 Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867 || ||| || |||| ||||||||||||| |||| ||| | | || | | || Sbjct 736 AGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATC 678 Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAA 59926 ||||| | || |||||| | || || | ||| || || || | ||| || || | Sbjct 677 AAGGACTCAGACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGC-GTCAC 619 Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTC 59985 | || || | |||||| | | ||||| || || || ||| ||||| | || Sbjct 618 GAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTC-AGAATCGTTTGCGGAGCGGA 560 Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 || | || ||||| ||||||||||| || |||||||| || || || || || || | Sbjct 559 TCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTT 500 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 |||| || ||||| || | ||||| || |||| ||||| |||||| |||| || || | Sbjct 499 GGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCGCGAG 440 Query 60106 ACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTATTGGAAAAATGC 60164 | ||||| | || || || || ||| ||| || || | || |||| || Sbjct 439 ATGAGGGTTTGCACTGCGACTTCGC-GTGCTTGCTGTACTCGCTGCT-GAGGAAGAA--G 384 Query 60165 CCTTCCAAGGATATTCACAAGATTGTTCAGTGG----GCTTGTGAAG-TGGAGAGCGAGT 60219 | | ||||| ||| | | ||| | || ||| || | ||||| |||| Sbjct 383 CTGAGCGAGGATCGGGTGAAG-TCGATCATACGAAACGC-GGTGGAGATAGAGAGAGAGT 326 Query 60220 TCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGT 60279 || | |||||| | || ||| || | || ||| ||| | ||||| |||| Sbjct 325 TCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGCCAGT 266 Query 60280 ACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCG 60339 |||| |||| || ||||| | || |||| || |||| | || || ||| | Sbjct 265 ACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAATG 206 Query 60340 TGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTG 60399 || | ||||| ||||| ||||||||| ||| ||| | ||||||||||| ||||| | Sbjct 205 TGCAGAACCCGTTCGAATGGATGGAGCTGATCAGCTTGCAGGGGAAGACCAATTTCTTCG 146 Query 60400 AGAAGCGGGTCGGGGATTA 60418 ||||| |||| ||||| || Sbjct 145 AGAAGAGGGTTGGGGAGTA 127 >seq853 Length=703183 Score = 145 bits (160), Expect = 8e-30 Identities = 560/859 (65%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| ||||| || | || |||||| ||| ||||||| Sbjct 574107 TACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAG 574048 Query 59634 ATTGACCTC-GCCGGAGACCTGAAGGATTGGGA----CAAGCTCAATTACGACGAGCAGC 59688 |||| | ||| | ||||| | ||||| | ||| | || |||| ||| Sbjct 574047 GTTGATTTATGCCAG-GACCTACGCCACTGGGAACTTCTAGCCCC----CGGCGAGAAGC 573993 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||||||| || || ||||||||||| || ||| || ||||| |||| ||| Sbjct 573992 ACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATTGTTTTGGAGAATC 573933 Query 59749 TAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC 59808 | | | | || ||||| |||||| | ||||||| || | ||||||| | | Sbjct 573932 TCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGAGCCTTCTACGGCTTCC 573873 Query 59809 AG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTC 59867 || ||| || |||| ||||||||||||| |||| ||| | | || | | || Sbjct 573872 AGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATC 573814 Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAA 59926 ||||| | || |||||| | || || | ||| || || || | ||| || || | Sbjct 573813 AAGGACTCAGACGAGAAGAACAGGCTTTTTCATGCGATCGATACCATTCCCTGC-GTCAC 573755 Query 59927 ACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTC 59985 | || || | |||||| | | ||||| || || || ||| ||||| | || Sbjct 573754 GAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTC-AGAATCGTTTGCGGAGCGGA 573696 Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 || | || ||||| ||||||||||| || |||||||| || || || || || || | Sbjct 573695 TCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTT 573636 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 |||| || ||||| || | ||||| || |||| ||||| |||||| |||| || || | Sbjct 573635 GGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGAGTTGATCTCGCGAG 573576 Query 60106 ACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTATTGGAAAAATGC 60164 | ||||| | || || || || ||| ||| || || | || |||| || Sbjct 573575 ATGAGGGTTTGCACTGCGACTTCGC-GTGCTTGCTGTACTCGCTGCT-GAGGAAGAA--G 573520 Query 60165 CCTTCCAAGGATATTCACAAGATTGTTCAGTGG----GCTTGTGAAG-TGGAGAGCGAGT 60219 | | ||||| ||| | | ||| | || ||| || | ||||| |||| Sbjct 573519 CTGAGCGAGGATCGGGTGAAG-TCGATCATACGAAACGC-GGTGGAGATAGAGAGAGAGT 573462 Query 60220 TCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGT 60279 || | |||||| | || ||| || | || ||| ||| | ||||| |||| Sbjct 573461 TCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGCCAGT 573402 Query 60280 ACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCG 60339 |||| |||| || ||||| | || |||| || |||| | || || ||| | Sbjct 573401 ACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAATG 573342 Query 60340 TGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTG 60399 || | ||||| ||||| ||||||||| ||| ||| | ||||||||||| ||||| | Sbjct 573341 TGCAGAACCCGTTCGAGTGGATGGAGCTGATCAGCTTGCAGGGGAAGACCAATTTCTTCG 573282 Query 60400 AGAAGCGGGTCGGGGATTA 60418 ||||| |||| ||||| || Sbjct 573281 AGAAGAGGGTTGGGGAGTA 573263 >seq547 Length=418891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||||| |||||| | |||||| | || ||| || | || ||| ||| | | Sbjct 380747 GAGAGAGAGTTCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTA 380688 Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 |||| |||||||| |||| || ||||| | || |||| || |||| | || Sbjct 380687 ATGAGCCAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAG 380628 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| ||| | ||||| ||||| ||||||||| ||| ||| | ||||||||| Sbjct 380627 ATGTACAATGTGCAGAACCCGTTCGAATGGATGGAGCTGATCAGCTTGCAGGGGAAGACC 380568 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||| |||||| |||| ||||| || Sbjct 380567 AATTTCTTCGAGAAGAGGGTTGGGGAGTA 380539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548455219629120