Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7758 125 8e-24 seq853 125 8e-24 seq1816 87.8 2e-12 seq1319 86.0 7e-12 seq316 86.0 7e-12 seq125 86.0 7e-12 seq38 86.0 7e-12 seq191 84.2 2e-11 seq492 82.4 8e-11 >seq7758 Length=1097 Score = 125 bits (138), Expect = 8e-24 Identities = 481/735 (65%), Gaps = 38/735 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||| ||| || || || ||||||||||| | ||| ||| ||||||| Sbjct 127 TACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCTGATCAGCTCCATC 186 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || ||||| ||||||| || ||| || |||| | ||||| || |||| || Sbjct 187 CATTCGAACGGGTTCTGCACATTGTACAT---CTTCCCGTACCCAAGCTCAGCCAGCAGC 243 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 | ||||||||| || | |||||||| ||||| | | | ||| || | || | Sbjct 244 CTATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCACCAGGGCG 303 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 ||||| | || ||| | ||||| ||||| | ||| | | | || || | Sbjct 304 CACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCC--ACCGCGTT------TCGTA 355 Query 74700 TGAATGTCTTTG---GAA----GGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGT-CACG 74750 ||| | ||| || | || ||| | |||||| | ||||| ||| |||| Sbjct 356 TGATCGACTTCACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 415 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 | || || ||| | || ||||||| ||||| || || || |||| || ||| Sbjct 416 -CGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCA 474 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || |||||||| | |||||| || || || || || |||||| || Sbjct 475 GGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATC 534 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCA 74929 ||||| || || |||||||| || | || | ||| |||| | | | | ||| ||||| Sbjct 535 CCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTC-TGAGCCGTCGATCCA 593 Query 74930 AGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAA 74986 | ||||| | || || |||| ||| ||||||| | |||||||||| || || Sbjct 594 GCGTAGGGCCCACTGGGCCTTCTTCGT--GAC-GCAGGGAATGGTATCGATCGCATGAAA 650 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 || || |||||| || | ||||||| | | || | | || |||| |||| Sbjct 651 AAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTC 710 Query 75047 CGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 || || || |||| || ||| |||| | ||||||| | || ||||| | | || Sbjct 711 GGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCTCGAGCCTCGGAGACCT 769 Query 75106 GTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGC 75163 | || ||||| || || ||| | ||| |||||||| || |||||||| ||||| || Sbjct 770 GGACTTCCTTCATG-AACCTTC-CGGCGAGATTCTCCAAAACAATGCCGTCAGAGGCAGC 827 Query 75164 GAAAAAAGCCAGTAC 75178 ||| || || || || Sbjct 828 GAAGAAGGCGAGCAC 842 >seq853 Length=703183 Score = 125 bits (138), Expect = 8e-24 Identities = 481/735 (65%), Gaps = 38/735 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||| ||| || || || ||||||||||| | ||| ||| ||||||| Sbjct 573263 TACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAAGCTGATCAGCTCCATC 573322 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || ||||| ||||||| || ||| || |||| | ||||| || |||| || Sbjct 573323 CACTCGAACGGGTTCTGCACATTGTACAT---CTTCCCGTACCCAAGCTCAGCCAGCAGC 573379 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 | ||||||||| || | |||||||| ||||| | | | ||| || | || | Sbjct 573380 CTATCCGCCACGAACTCGATGTACTGGCTCATTAGATCGCCGTTCATCCCCACCAGGGCG 573439 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 ||||| | || ||| | ||||| ||||| | ||| | | | || || | Sbjct 573440 CACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCC--ACCGCGTT------TCGTA 573491 Query 74700 TGAATGTCTTTG---GAA----GGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGT-CACG 74750 ||| | ||| || | || ||| | |||||| | ||||| ||| |||| Sbjct 573492 TGATCGACTTCACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 573551 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 | || || ||| | || ||||||| ||||| || || || |||| || ||| Sbjct 573552 -CGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGAACGTCAGTCCA 573610 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || |||||||| | |||||| || || || || || |||||| || Sbjct 573611 GGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATC 573670 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCA 74929 ||||| || || |||||||| || | || | ||| |||| | | | | ||| ||||| Sbjct 573671 CCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTC-TGAGCCGTCGATCCA 573729 Query 74930 AGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAA 74986 | ||||| | || || |||| ||| ||||||| | |||||||||| || || Sbjct 573730 GCGTAGGGCCCACTGGGCCTTCTTCGT--GAC-GCAGGGAATGGTATCGATCGCATGAAA 573786 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 || || |||||| || | ||||||| | | || | | || |||| |||| Sbjct 573787 AAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTC 573846 Query 75047 CGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 || || || |||| || ||| |||| | ||||||| | || ||||| | | || Sbjct 573847 GGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCTCGAGCCTCGGAGACCT 573905 Query 75106 GTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGC 75163 | || ||||| || || ||| | ||| |||||||| || |||||||| ||||| || Sbjct 573906 GGACTTCCTTCATG-AACCTTC-CGGCGAGATTCTCCAAAACAATGCCGTCAGAGGCAGC 573963 Query 75164 GAAAAAAGCCAGTAC 75178 ||| || || || || Sbjct 573964 GAAGAAGGCGAGCAC 573978 >seq1816 Length=195573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 93319 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 93378 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 93379 TGAGCTATGAAAGCA 93393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 93490 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 93549 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 93550 TGAGCTATGAAAGCA 93564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 93653 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 93712 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 93713 TGAGCTATGAAAGCA 93727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 93817 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 93876 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 93877 TGAGCTATGAAAGCA 93891 >seq1319 Length=858944 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 396308 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 396249 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 396248 TGAGCTATGAAAGC 396235 >seq316 Length=513313 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 364234 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 364293 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 364294 TGAGCTACGAGAGC 364307 >seq125 Length=85986 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 22800 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22741 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 22740 TGAGCTATGAAAGC 22727 >seq38 Length=636309 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 ||||||||||||||||| || ||| ||||||| |||| |||||| | |||||| ||||| Sbjct 411496 GACTCGTGGTTGAACAGTATCCCATTACACGCGAACAGCCCGTAGGCCTCGCGATAGTTG 411437 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 ||| ||||| | | | || || || | |||||| |||||||| || || Sbjct 411436 ACCGTGTACCAATGCGCCGCGCATTTAGAAACAGCGTAGGGGGATCGGGGGTGAAACGGC 411377 Query 124830 GTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 || | || ||| | || || | || ||| ||||||||||| | || ||||| Sbjct 411376 GTCGTCTCCGATTGCGGAG---GCGGGGTCGCCCCGAACATCTCCGACGACCCGGCCTGG 411320 Query 124890 TAGAATTT 124897 ||| |||| Sbjct 411319 TAGTATTT 411312 >seq191 Length=1252152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 146269 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 146210 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 146209 TGAGCTATGAAAGCAA 146194 >seq492 Length=331140 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 63251 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 63310 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 63311 TGAGCTATGAAAGCA 63325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547146585650400