Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq96 255 7e-63 seq6377 104 3e-17 seq3478 91.5 2e-13 >seq96 Length=556063 Score = 255 bits (282), Expect = 7e-63 Identities = 517/771 (67%), Gaps = 21/771 (3%) Strand=Plus/Plus Query 190796 TTTGATGTGCTTGATGACTGGTTAAAACGTGATAGATTTGTATTCATAGGTTGGTCTGGT 190855 |||||| | | |||||||||||| | || | ||||| || ||||||||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 190856 CTTATATTATTACCATGTGCTTTCCTATCAATTGGTGGTTGGTTCACAGGAACTACATTT 190915 || | | || || ||||| | | | | || ||||||| |||||| || || ||| Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 190916 GTTACTAGTTGGTATACACATGGAATTGCATCTTCATACCTTGAAGGAGCAAACTTTTTG 190975 || ||| |||||||| |||| | | ||| ||| || | ||||| |||||||| Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 190976 ACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCATAGTTTATTATTCTTATGGGGT 191035 || | ||||| ||||| || | | || | | | || |||||| || |||||||| Sbjct 7112 ACCGTCGCAGTTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGT 7171 Query 191036 CCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTA 191095 || | |||||||| ||| |||||||| ||| | || || || |||| ||||| Sbjct 7172 CCTAAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTT 7231 Query 191096 GCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGA 191155 || || ||||| | || || || ||||| || ||||||||||| |||||| |||| || Sbjct 7232 GCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 7291 Query 191156 TTGGTGGGTATTAGACCTTACAATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACA 191215 | | | ||||||| ||||| | || || ||| | || | ||||| Sbjct 7292 TCTATTCAATTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTT 7351 Query 191216 AGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGA 191275 ||||||| |||| ||||| || |||||| ||||||| ||||| || ||||| Sbjct 7352 TATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGT 7411 Query 191276 GTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAAC 191335 || ||||| || ||| ||| || || || | ||||| || || ||| ||| | ||| Sbjct 7412 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 7471 Query 191336 CCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCAT 191395 || || || |||||||||||||| || | | || | || | ||||||| |||||| Sbjct 7472 CCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCAT 7531 Query 191396 GGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGTT 191455 |||||||| || | || || || | ||| ||||||| | | | Sbjct 7532 GGTGCTACTATAGAAAATACTTTATTTGA------------------AGATGGTGATGGT 7573 Query 191456 CAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATC 191515 || |||| || | || ||| | ||||| || | ||| ||||||||||| ||| || Sbjct 7574 GCAAATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 7630 Query 191516 ACTGCAAACAGATTCTGGTCACAGATATTTGGTATTGCATTCTCTAACAAA 191566 || | || | || ||||| || || ||| | |||| || || || ||| Sbjct 7631 ACCACTAATCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAA 7681 Score = 118 bits (130), Expect = 1e-21 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 191575 ACACTTCTTGATGTTGTTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGT 191634 ||| ||||| ||||| ||||| || |||| | |||||| | | || | || Sbjct 8873 ACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGT 8932 Query 191635 AGGTCTTGCACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGA 191694 ||||| || || ||| || | || ||||| || || ||||| || || | ||||| || Sbjct 8933 CGGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 8992 Query 191695 AGACCCAGAGTTTGAAACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 191754 ||| | || ||||| || ||||| || || || ||||| | ||||||||||| | || Sbjct 8993 AGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGC 9052 Query 191755 ATGGATGTCTTCAGTAGACCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACC 191814 |||||| | | ||| || |||||||| ||| || | |||| ||||| |||||||| Sbjct 9053 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACC 9112 Query 191815 TAGAGGAAATGCATTGTAAT 191834 | ||||| || | |||| Sbjct 9113 CCGTGGAAACGCTCTTTAAT 9132 >seq6377 Length=4400 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 182561 TTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAACT 182620 ||||||||||| | ||||||||| || || || ||||||||||||||| | || |||| Sbjct 1149 TTAGAAATGGTACTTTGGGATGGATGTAAGGCGAAGCAAATTGCTTCCACTCCAAGAATA 1090 Query 182621 GAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTT 182670 ||||| || || || ||||||||||||||| | || ||||| || || || Sbjct 1089 GAGGACTGCGTCGGTTGTAAGAGATGTGAATCCGCCTGTCCAACGGATTT 1040 >seq3478 Length=3799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 207/308 (67%), Gaps = 19/308 (6%) Strand=Plus/Minus Query 186271 TACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACA 186330 |||||| ||| | ||||| ||||||||||| | | || |||||| ||| |||| ||| Sbjct 3461 TACTTTGGGACTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACA 3402 Query 186331 GATATTAATTGAACCTATATTTGCACAGTGGATACAGGCAGCATCA-GGTAAGATGATGT 186389 || || || |||||||||||||| || |||||||| | || ||| ||||| | | Sbjct 3401 AATCTTGATCGAACCTATATTTGCCCAATGGATACAATCTGC-TCATGGTAAAACTTCAT 3343 Query 186390 ATGGATTAAGTTTCTTACTATCTGATCCAAATAGTGC----TGCAA---GTCTAGCAGCA 186442 |||| || | | | ||||| | ||| || | | ||| | | | |||| Sbjct 3342 ATGGGTTCGATGTACTTTTATCTTCAACGAATGGTCCAGCGTTCAATGCGGGTCGAAGCA 3283 Query 186443 GAGAGTATGCCTGGTAATCATTACTGGATGAGTGCTATGAATGATCAAACAAACAGTCTG 186502 | || | |||||| ||| | | || | | ||||| | | || || Sbjct 3282 TATGGT-TACCTGGT---------TGGTTAAATGTTGTTAATGAGAATAGTAATTCACTA 3233 Query 186503 TTTCTACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACAT 186562 || || |||||||||| | ||||| |||||||||||||||||||| || || |||||| Sbjct 3232 TTCTTAACAATAGGACCCGGAGATTTCTTAGTTCATCATGCTATTGCTCTAGGTTTACAT 3173 Query 186563 ACTACAAC 186570 || || || Sbjct 3172 ACAACTAC 3165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631347103459680