Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2255 93.3 3e-14 seq176 84.2 2e-11 >seq2255 Length=141741 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| ||||||||| ||||| | || || |||||| | Sbjct 96043 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 96102 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || ||||| ||||| || ||| |||| || | Sbjct 96103 GATACTATTGATAAT--GTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 96160 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || | || |||| | | | | | | || |||| Sbjct 96161 AGCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGACGGAAGGACCCTTGCTGACTACA 96220 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| |||| |||| ||||| | || ||||||| || Sbjct 96221 ACATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGACTGCGTGGTGG 96269 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||| | |||||||| ||||| | || || |||||| | Sbjct 140015 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCT 139956 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||| ||||| || ||| | || || | Sbjct 139955 GATACTATTGACAAT--GTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCAGACC 139898 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || |||| || | | | | | | |||| |||| Sbjct 139897 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACA 139838 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| || |||| ||||| | ||| ||||||| || Sbjct 139837 ACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 139789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||||||||| || || | || || |||||| | Sbjct 140243 ATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAAAGCTCG 140184 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| |||||| || || ||||| |||| ||| | Sbjct 140183 GATACCATAGATAAT--GTCAAGGCAAAAATTCAGGATAAGGAAGGCATTCCCCCGGACC 140126 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| || || || || || | || || | |||| | | | ||||| | Sbjct 140125 AGCAGAGGCTAATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCTGATTATA 140066 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||||||| |||| | || |||||||| || Sbjct 140065 ACATCCAAAAGGAATCAACTTTGCACCTGGTGCTTCGGTTGCGTGGTGG 140017 >seq176 Length=136227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| || || |||||| ||||| | || ||||| ||| || Sbjct 89073 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 89014 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || || || || || ||||| || ||| | || || | Sbjct 89013 GATACCATTGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 88956 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || ||||| || |||| | | | | | ||||||| Sbjct 88955 AGCAGAGGCTTATCTTCGCCGGTAAGCAATTAGAGGACGGTAGGACCCTTGCGGATTACA 88896 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||||||| |||||| ||||| || | || || Sbjct 88895 ACATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGG 88847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355818387383196