Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq736 89.7 4e-13 seq2255 87.8 2e-12 >seq736 Length=481145 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || || || || || || || || || |||| || Sbjct 406951 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCGTCCTC 407010 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || ||||||||||| || | || | || ||| |||||| Sbjct 407011 TAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATGCCCTCCTTGTCCTG 407070 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 407071 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCT 407129 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || ||||||||||||| Sbjct 407130 TGCCGGTAAGGGTTTTCACGAAGATTTGCATCT 407162 >seq2255 Length=141741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||||| || ||||| || ||||| || ||| | || || Sbjct 96024 CACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 95965 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || || | ||||||||| | ||| | || ||| |||||| Sbjct 95964 AAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 95905 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 95904 GATCTTTGCCTTGACATTGTCAATGGTATCTGAGCTT---TCAACTTCCAAGGTGATTGT 95848 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||||||||| Sbjct 95847 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 95815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429492474337124