Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2255 107 1e-18 seq486 100 2e-16 seq297 95.1 8e-15 seq49 95.1 8e-15 seq176 93.3 3e-14 seq736 87.8 1e-12 >seq2255 Length=141741 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 95131 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 95190 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| || Sbjct 95191 GACACCATTGACAATGTCAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 95249 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 95250 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAA 95309 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 95310 CATCCAGAAGGAGTCCAC 95327 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||| | | Sbjct 140699 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 140640 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || ||||| || ||| | || || || || Sbjct 140639 GACACGATCGACAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCA 140581 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||| ||||| Sbjct 140580 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 140521 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 140520 CATCCAGAAGGAGTCCAC 140503 >seq486 Length=243247 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || || || || || |||||||| || ||||| | Sbjct 18108 AATGCAGATTTTTGTCAAAACTCTGACTGGGAAGACAATCACTCTTGATGTTGATGGTTC 18049 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | ||||| |||||||| ||| | || || |||| Sbjct 18048 TGATACAATTGACAATGTGAAAGC-TAAAATCCAAGACAAAGAGGGTTTCCCTCCGGATC 17990 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || ||||| || |||| ||| || | | ||||| | Sbjct 17989 AGCAGAGGCTCATTTTTGCTGGGAAGCAACTTGAGGACGGACGTACCCTGGCTGATTATA 17930 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 17929 ACATCCAGAAAGAGTCTAC 17911 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || |||| || || || || | || Sbjct 20275 ATGCAGATATTTGTGAAAACCCTTACCGGCAAGACTGTCACCCTTGAGGTGGAGAGCTCG 20216 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| || | || || || || || || || | ||||| || || Sbjct 20215 GACACTATTGATATTGTCAAGACTAAGATACAGGATAAGGAGGGGATTCCGCCTGACCAG 20156 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||| || || || ||||||| | | ||||| | |||||||||| Sbjct 20155 CAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCCGATTACAAC 20096 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || || || || || || || Sbjct 20095 ATCCAGAAGGAATCTACTTTGCA 20073 >seq297 Length=529300 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || || || || || || || ||| Sbjct 439643 AACATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCC 439702 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| || || | || ||||| Sbjct 439703 TCTGACACCATCGACAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGA 439761 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || |||||||| || || || |||| || || ||| |||||| Sbjct 439762 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTAGCCGATTA 439821 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 439822 CAACATCCAGAAGGAATCGAC 439842 >seq49 Length=410483 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || || || || ||||||||||| || || | Sbjct 302816 AAGATGCAGATTTTCGTGAAGACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGC 302875 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || ||||| Sbjct 302876 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGCATTCCACCAGA 302934 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || ||||| ||||| || || ||||| | ||||| || | || || Sbjct 302935 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACCTTGGCTGACTA 302994 Query 23787 CAACATACAAAAAG 23800 ||||| || |||| Sbjct 302995 TAACATCCAGAAAG 303008 >seq176 Length=136227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || ||||| ||| | || || || | | Sbjct 88845 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACGATAACTTTGGAGGTCGAGAGCTCT 88786 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| ||||| | || |||||||| Sbjct 88785 GATACGATTGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAAGGGATTCCTCCAGATCA 88727 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||| |||| || | | | ||| | | |||||||| Sbjct 88726 GCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAA 88667 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 88666 CATCCAGAAAGAGTCGAC 88649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || ||||| || ||||| || || || | | Sbjct 89073 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 89014 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || |||||||| Sbjct 89013 GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCAG 88954 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||| | || |||| | || | | ||||||||| Sbjct 88953 CAGAGGCTTATCTTCGCCGGTAAGCAATTAGAGGACGGTAGGACCCTTGCGGATTACAAC 88894 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || || || || ||| Sbjct 88893 ATCCAAAAGGAGTCAACTTTGCACTTGGTT 88864 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || ||||| || ||||| | | Sbjct 88617 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 88558 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || ||| ||||| || || | || || || || Sbjct 88557 GACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAGGGGATCCCACCGGACCA 88499 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| || || || | || || | | ||||| || Sbjct 88498 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 88439 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 88438 TATCCAGAACGAGTCCAC 88421 >seq736 Length=481145 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || |||||||| || || || | || Sbjct 406476 ATGCAGATTTTTGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGAGCTCG 406417 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || ||| | || || || || Sbjct 406416 GACACCATTGACAATGTCAAGGC-GAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 406358 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || ||||| || | || || | | || ||||| Sbjct 406357 GCAAAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAA 406298 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| | ||||| || Sbjct 406297 CATCCAGAAGGAGTCCACTCTCCATTTGGT 406268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337967795395184