Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq174 111 2e-19 seq6055 102 1e-16 >seq174 Length=291255 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || | | ||||||| || ||||||| |||| | || ||||| Sbjct 139499 TCATATTGGGTGTACAACTTCTCAAATTTTTCACCCCAAAGATCAGCTAAGCCAGGAGCC 139558 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | ||| ||||| | ||||| | | |||| || ||| ||||||||| Sbjct 139559 TCATTTGGACAAAACAAAGACCATTTCCCATCACCTTGGACTCTTTCCATGAAGAGATCA 139618 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || ||||| |||||| |||||||||||| | | ||||||||| Sbjct 139619 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 139662 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||||||| |||| || | ||||||| ||||| | ||||| | || | | || Sbjct 140428 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 140487 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| | ||| || | ||||| | ||| || || || || | || | ||||| Sbjct 140488 GTAGGTTTGGAGAGCAGACGCAATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 140546 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| ||||| || ||||| || |||| | ||||| || || | ||| || | || | Sbjct 140547 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 140606 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||| |||| || ||| ||||| || ||||| || Sbjct 140607 GAGTTTTAAAACCAAAGTAGTCATAATCAAAATCTCTTTCATAAATGAT 140655 >seq6055 Length=27044 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| | || |||||| |||||| | || ||||| ||| |||| || Sbjct 444 CTCTCTTTCATATCGGGTGTATAGCTCTTCAAAATTTTCACCCCAGCAATCTGCCAAACC 385 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || | ||||| || || | ||||||||| || ||| | | | ||||| || ||| || Sbjct 384 TGGAGACTCATTAGGACAAAACAATGACCAATCGCCACCATTTTGAACTCTTTCCATGAA 325 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| || ||| ||| ||||| || | || ||| ||||| Sbjct 324 AAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGAGCTCGATGCTCTTC 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694580681262720