Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq174 111 2e-19 seq6055 102 1e-16 >seq174 Length=291255 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| || || ||| ||||||| || ||||||| |||| | || |||||| Sbjct 139499 TCATATTGGGTGTACAACTTCTCAAATTTTTCACCCCAAAGATCAGCTAAGCCAGGAGCC 139558 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | ||| ||||| | ||||| | | || | || ||| ||||||||| Sbjct 139559 TCATTTGGACAAAACAAAGACCATTTCCCATCACCTTGGACTCTTTCCATGAAGAGATCA 139618 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 || ||||| |||||| |||||||||||| | | | ||||||| Sbjct 139619 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 139662 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||| || | || |||| |||||| ||||||| | || | | || Sbjct 140428 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 140487 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| | | | | | || || | ||| || || || |||| || | ||||| Sbjct 140488 GTAGGTTTGGAGAGCAGACGCAATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 140546 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| ||||| || | ||| ||| |||| | ||||| || || | ||| || | || | Sbjct 140547 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 140606 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||| |||| || ||| |||||||| ||||| || Sbjct 140607 GAGTTTTAAAACCAAAGTAGTCATAATCAAAATCTCTTTCATAAATGAT 140655 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/122 (77%), Gaps = 8/122 (7%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCT-TAT 76142 |||||| || | |||||| || |||||||||||||||||||||||||| || || | || Sbjct 138610 AAGAATGAAAGTATCTGCAAGACCCTGAACTCCAATACCAATAGGTCTGTG-CTGTAAAT 138668 Query 76143 TGGA---AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGAT 76199 | || || ||| ||| ||| ||||| ||||| | ||| || ||||| ||||||| Sbjct 138669 TTGACCTCTTTGCAGTTTC---AATGGGGTAGTAATTGACATCAATTATTTTGTTGAGAT 138725 Query 76200 TT 76201 || Sbjct 138726 TT 138727 >seq6055 Length=27044 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| | || |||| | |||||| | || ||||| ||| ||||||| Sbjct 444 CTCTCTTTCATATCGGGTGTATAGCTCTTCAAAATTTTCACCCCAGCAATCTGCCAAACC 385 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| | ||||| ||||| | ||||||||| || ||| | | | ||| | || ||| || Sbjct 384 TGGAGACTCATTAGGACAAAACAATGACCAATCGCCACCATTTTGAACTCTTTCCATGAA 325 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||||| | ||| || ||| ||| ||||| || | || | | ||||| Sbjct 324 AAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGAGCTCGATGCTCTTC 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712843964271360